1CVJ
X-RAY CRYSTAL STRUCTURE OF THE POLY(A)-BINDING PROTEIN IN COMPLEX WITH POLYADENYLATE RNA
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
K [auth C] | SCOP2B Superfamily | RNA-binding domain, RBD | 8035349 | 3000110 | SCOP2B (2022-06-29) |
K [auth C] | SCOP2B Superfamily | RNA-binding domain, RBD | 8035348 | 3000110 | SCOP2B (2022-06-29) |
N [auth F] | SCOP2B Superfamily | RNA-binding domain, RBD | 8035348 | 3000110 | SCOP2B (2022-06-29) |
O [auth G] | SCOP2B Superfamily | RNA-binding domain, RBD | 8035349 | 3000110 | SCOP2B (2022-06-29) |
O [auth G] | SCOP2B Superfamily | RNA-binding domain, RBD | 8035348 | 3000110 | SCOP2B (2022-06-29) |
P [auth H] | SCOP2B Superfamily | RNA-binding domain, RBD | 8035348 | 3000110 | SCOP2B (2022-06-29) |
I [auth A] | SCOP2 Family | Canonical RBD | 8022968 | 4000236 | SCOP2 (2022-06-29) |
I [auth A] | SCOP2 Family | Canonical RBD | 8022969 | 4000236 | SCOP2 (2022-06-29) |
I [auth A] | SCOP2 Superfamily | RNA-binding domain, RBD | 8035348 | 3000110 | SCOP2 (2022-06-29) |
I [auth A] | SCOP2 Superfamily | RNA-binding domain, RBD | 8035349 | 3000110 | SCOP2 (2022-06-29) |
J [auth B] | SCOP2B Superfamily | RNA-binding domain, RBD | 8035348 | 3000110 | SCOP2B (2022-06-29) |
J [auth B] | SCOP2B Superfamily | RNA-binding domain, RBD | 8035349 | 3000110 | SCOP2B (2022-06-29) |
L [auth D] | SCOP2B Superfamily | RNA-binding domain, RBD | 8035348 | 3000110 | SCOP2B (2022-06-29) |
L [auth D] | SCOP2B Superfamily | RNA-binding domain, RBD | 8035349 | 3000110 | SCOP2B (2022-06-29) |
M [auth E] | SCOP2B Superfamily | RNA-binding domain, RBD | 8035349 | 3000110 | SCOP2B (2022-06-29) |
M [auth E] | SCOP2B Superfamily | RNA-binding domain, RBD | 8035348 | 3000110 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
K [auth C] | RRM_1 | e1cvjC1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1 | ECOD (1.6) |
K [auth C] | RRM_1_7 | e1cvjC2 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_7 | ECOD (1.6) |
N [auth F] | RRM_1 | e1cvjF1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1 | ECOD (1.6) |
N [auth F] | RRM_1_7 | e1cvjF2 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_7 | ECOD (1.6) |
O [auth G] | RRM_1 | e1cvjG1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1 | ECOD (1.6) |
O [auth G] | RRM_1_7 | e1cvjG2 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_7 | ECOD (1.6) |
P [auth H] | RRM_1 | e1cvjH2 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1 | ECOD (1.6) |
P [auth H] | RRM_1_7 | e1cvjH1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_7 | ECOD (1.6) |
I [auth A] | RRM_1 | e1cvjA1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1 | ECOD (1.6) |
I [auth A] | RRM_1_7 | e1cvjA2 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_7 | ECOD (1.6) |
J [auth B] | RRM_1 | e1cvjB1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1 | ECOD (1.6) |
J [auth B] | RRM_1_7 | e1cvjB2 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_7 | ECOD (1.6) |
L [auth D] | RRM_1 | e1cvjD1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1 | ECOD (1.6) |
L [auth D] | RRM_1_7 | e1cvjD2 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_7 | ECOD (1.6) |
M [auth E] | RRM_1 | e1cvjE1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1 | ECOD (1.6) |
M [auth E] | RRM_1_7 | e1cvjE2 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_7 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
K [auth C] | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
N [auth F] | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
O [auth G] | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
P [auth H] | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
I [auth A] | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
J [auth B] | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
L [auth D] | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
M [auth E] | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00076 | RNA recognition motif (RRM_1) | RNA recognition motif | The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006515 | Polyadenylate binding protein, human types 1, 2, 3, 4 | Family | |
IPR002004 | Polyadenylate-binding protein/Hyperplastic disc protein | Domain | |
IPR003954 | RNA recognition motif domain, eukaryote | Domain | |
IPR000504 | RNA recognition motif domain | Domain | |
IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily | Homologous Superfamily | |
IPR036053 | PABC (PABP) domain | Homologous Superfamily | |
IPR034364 | PABP, RNA recognition motif 1 | Domain | |
IPR035979 | RNA-binding domain superfamily | Homologous Superfamily | |
IPR045305 | PABP, RNA recognition motif 2 | Domain |
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
P11940 | :