9AUC

Human Amylin1 Receptor in Complex with Gs and human Calcitonin Gene-Related Peptide


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

Cryo-EM Structure of the Human Amylin 1 Receptor in Complex with CGRP and Gs Protein.

Cao, J.Belousoff, M.J.Danev, R.Christopoulos, A.Wootten, D.Sexton, P.M.

(2024) Biochemistry 

  • DOI: https://doi.org/10.1021/acs.biochem.4c00114
  • Primary Citation of Related Structures:  
    9AUC

  • PubMed Abstract: 

    Inhibition of calcitonin gene-related peptide (CGRP) or its cognate CGRP receptor (CGRPR) has arisen as a major breakthrough in the treatment of migraine. However, a second CGRP-responsive receptor exists, the amylin (Amy) 1 receptor (AMY 1 R), yet its involvement in the pathology of migraine is poorly understood. AMY 1 R and CGRPR are heterodimers consisting of receptor activity-modifying protein 1 (RAMP1) with the calcitonin receptor (CTR) and the calcitonin receptor-like receptor (CLR), respectively. Here, we present the structure of AMY 1 R in complex with CGRP and Gs protein and compare it with the reported structures of the AMY 1 R complex with rat amylin (rAmy) and the CGRPR in complex with CGRP. Despite similar protein backbones observed within the receptors and the N- and C-termini of the two peptides bound to the AMY 1 R complexes, they have distinct organization in the peptide midregions (the bypass motif) that is correlated with differences in the dynamics of the respective receptor extracellular domains. Moreover, divergent conformations of extracellular loop (ECL) 3, intracellular loop (ICL) 2, and ICL3 within the CTR and CLR protomers are evident when comparing the CGRP bound to the CGRPR and AMY 1 R, which influences the binding mode of CGRP. However, the conserved interactions made by the C-terminus of CGRP to the CGRPR and AMY 1 R are likely to account for cross-reactivity of nonpeptide CGRPR antagonists observed at AMY 1 R, which also extends to other clinically used CGRPR blockers, including antibodies.


  • Organizational Affiliation

    Drug Discovery Biology Theme, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville, Victoria 3052, Australia.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(s) subunit alpha isoforms short394Homo sapiensMutation(s): 8 
Gene Names: GNASGNAS1GSP
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Find proteins for P63092 (Homo sapiens)
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PHAROS:  P63092
GTEx:  ENSG00000087460 
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UniProt GroupP63092
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1350Homo sapiensMutation(s): 0 
Gene Names: GNB1
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PHAROS:  P62873
GTEx:  ENSG00000078369 
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UniProt GroupP62873
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2C [auth G]71Homo sapiensMutation(s): 0 
Gene Names: GNG2
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PHAROS:  P59768
GTEx:  ENSG00000186469 
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UniProt GroupP59768
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Nanobody 35D [auth N]138Lama glamaMutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Receptor activity-modifying protein 1149Homo sapiensMutation(s): 0 
Gene Names: RAMP1
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PHAROS:  O60894
GTEx:  ENSG00000132329 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Calcitonin gene-related peptide 1F [auth P]37Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000110680 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Calcitonin receptorG [auth R]501Homo sapiensMutation(s): 0 
Gene Names: CALCR
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PHAROS:  P30988
GTEx:  ENSG00000004948 
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Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
Y01
Query on Y01

Download Ideal Coordinates CCD File 
P [auth R],
Q [auth R]
CHOLESTEROL HEMISUCCINATE
C31 H50 O4
WLNARFZDISHUGS-MIXBDBMTSA-N
PLM
Query on PLM

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H [auth P],
I [auth R],
M [auth R],
N [auth R],
O [auth R]
PALMITIC ACID
C16 H32 O2
IPCSVZSSVZVIGE-UHFFFAOYSA-N
NAG
Query on NAG

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J [auth R],
K [auth R],
L [auth R]
2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
NFA
Query on NFA
F [auth P]L-PEPTIDE LINKINGC9 H12 N2 OPHE
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Australian Research Council (ARC)AustraliaIC200100052
National Health and Medical Research Council (NHMRC, Australia)Australia1150083
Australian Research Council (ARC)AustraliaDP210101504
Japan Science and TechnologyJapan18069571

Revision History  (Full details and data files)

  • Version 1.0: 2024-04-24
    Type: Initial release