XCL1 - X-C motif chemokine ligand 1

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 6 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: P47992 HGNC Approved Gene Symbol: XCL1 
Previous Symbols: LTN, SCYC1 Ensembl ENSG00000143184 
Synonyms : LPTN, ATAC, SCM-1a, SCM-1 Previous Names: "small inducible cytokine subfamily C, member 1 (lymphotactin)", "chemokine (C motif) ligand 1"
HgncId : HGNC:10645  Omim: 600250 
Refseq: NM_002995  GenBank: D43768 
 
Genomic coordinates: Cytogenetic location: 1q24.2 reset view
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

XCL1 Gene Structure

Chromosome: chr1〉e=168545936
Genbank ID: NM_002995 Orientation: +
Length coding sequence : 342 nucleotides.
Regionstartendregion lengthphase at end
UTR168,545,710168,545,875
Exon168,545,876168,545,936611
Exon168,549,301168,549,4151152
Exon168,550,290168,550,4581690
UTR168,550,459168,551,315