WDR48 - WD repeat domain 48

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 9 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: Q8TAF3 HGNC Approved Gene Symbol: WDR48 
Ensembl ENSG00000114742 
Synonyms : KIAA1449, P80, SPG60
HgncId : HGNC:30914  Omim: 612167 
Refseq: NM_020839  GenBank: AF468833 
 
Genomic coordinates: Cytogenetic location: 3p22.2 reset view
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

WDR48 Gene Structure

Chromosome: chr3
Genbank ID: NM_020839 Orientation: +
Length coding sequence : 2031 nucleotides.
Regionstartendregion lengthphase at end
UTR39,093,47639,093,516
Exon39,093,51739,093,564480
Exon39,104,54139,104,6811410
Exon39,107,30239,107,380791
Exon39,108,03939,108,121830
Exon39,108,23739,108,3661301
Exon39,110,26239,110,350890
Exon39,111,13439,111,2351020
Exon39,116,21739,116,4412250
Exon39,118,63039,118,704750
Exon39,119,62839,119,7301031
Exon39,121,20239,121,299980
Exon39,125,64639,125,7531080
Exon39,126,13639,126,232971
Exon39,127,00639,127,101961
Exon39,129,61939,129,7241062
Exon39,130,72239,130,809880
Exon39,133,11639,133,192772
Exon39,135,36539,135,5571930
Exon39,136,13939,136,234960
UTR39,136,23539,138,161