USH1C - USH1 protein network component harmonin

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 10 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: Q9Y6N9 HGNC Approved Gene Symbol: USH1C 
Previous Symbols: DFNB18 Ensembl ENSG00000006611 
Synonyms : PDZ73, harmonin, NY-CO-37, NY-CO-38, PDZ-73, AIE-75, PDZD7C Previous Names: "deafness, autosomal recessive 18", "Usher syndrome 1C (autosomal recessive, severe)", "Usher syndrome 1C"
HgncId : HGNC:12597  Omim: 605242 
Refseq: NM_005709  GenBank: AB006955 
 
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

USH1C Gene Structure

Chromosome: chr11
Genbank ID: NM_005709 Orientation: -
Length coding sequence : 1656 nucleotides.
Regionstartendregion lengthphase at end
UTR
17,565,85517,565,963
Exon17,565,81917,565,854360
Exon17,554,80217,554,869682
Exon17,552,94617,553,0891442
Exon17,552,70117,552,8391390
Exon17,548,77017,548,8781091
Exon17,548,56317,548,587252
Exon17,548,30017,548,357580
Exon17,547,89417,547,988952
Exon17,545,99817,546,082850
Exon17,544,96617,545,025600
Exon17,544,75817,544,814570
Exon17,544,33117,544,4731432
Exon17,542,89317,542,958662
Exon17,542,41717,542,5411251
Exon17,538,94817,539,021740
Exon17,523,48617,523,527420
Exon17,523,02917,523,082540
Exon17,522,59817,522,6971001
Exon17,519,70917,519,8181100
Exon17,518,30517,518,360562
Exon17,515,91117,515,923130
UTR
17,515,44217,515,910