TUB - tubby bipartite transcription factor

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 1 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: P50607 HGNC Approved Gene Symbol: TUB 
Ensembl ENSG00000166402 
Synonyms : rd5 Previous Names: "tubby (mouse) homolog", "tubby homolog (mouse)"
HgncId : HGNC:12406  Omim: 601197 
Refseq: NM_003320  GenBank: U54644 
 
Genomic coordinates: Cytogenetic location: 11p15.4 reset view
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

TUB Gene Structure

Chromosome: chr11
Genbank ID: NM_003320 Orientation: +
Length coding sequence : 1683 nucleotides.
Regionstartendregion lengthphase at end
UTR8,060,1798,060,420
Exon8,060,4218,060,5751552
Exon8,061,1928,061,239482
Exon8,111,1578,111,208520
Exon8,111,6168,111,7781631
Exon8,115,5938,115,7361441
Exon8,117,0458,117,2121681
Exon8,118,2328,118,3531220
Exon8,118,7758,118,9721980
Exon8,119,2618,119,3731132
Exon8,120,3058,120,4221180
Exon8,122,0508,122,148990
Exon8,122,3738,122,5441721
Exon8,123,0338,123,1661340
UTR8,123,1678,127,654