TRIM5 - tripartite motif containing 5

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 2 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: Q9C035  HGNC Approved Gene Symbol: TRIM5 
Ensembl ENSG00000132256 
Synonyms : RNF88, TRIM5alpha Previous Names: "tripartite motif-containing 5"
HgncId : HGNC:16276  Omim: 608487 
Refseq: NM_033034  GenBank: AF220025 
 
Genomic coordinates: Cytogenetic location: 11p15.4 reset view
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

TRIM5 Gene Structure

Chromosome: chr11
Genbank ID: NM_033034 Orientation: -
Length coding sequence : 1479 nucleotides.
Regionstartendregion lengthphase at end
UTR5,706,0975,706,339
UTR
5,701,4085,701,468
Exon5,700,9915,701,4074170
Exon5,700,3045,700,399960
Exon5,699,4345,699,6642310
Exon5,688,9195,688,941232
Exon5,687,2115,687,3111011
Exon5,686,8865,686,912271
Exon5,686,0395,686,6255870
UTR
5,684,4255,686,038