TRIM21 - tripartite motif containing 21

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 5 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: P19474 HGNC Approved Gene Symbol: TRIM21 
Previous Symbols: SSA1 Ensembl ENSG00000132109 
Synonyms : RNF81, RO52, Ro/SSA Previous Names: "Sjogren syndrome antigen A1 (52kDa, ribonucleoprotein autoantigen SS-A/Ro)", "tripartite motif-containing 21"
HgncId : HGNC:11312  Omim: 109092 
Refseq: NM_003141  GenBank: AF391283 
 
Genomic coordinates: Cytogenetic location: 11p15.5-p15.3 reset view
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

TRIM21 Gene Structure

Chromosome: chr11
Genbank ID: NM_003141 Orientation: -
Length coding sequence : 1425 nucleotides.
Regionstartendregion lengthphase at end
UTR4,414,8624,414,926
UTR
4,411,6404,411,688
Exon4,411,2324,411,6394080
Exon4,410,8844,410,979960
Exon4,409,5304,409,7602310
Exon4,408,1984,408,220232
Exon4,407,3874,407,4871011
Exon4,406,5154,407,0835690
UTR
4,406,1274,406,514