TJP1 - tight junction protein 1

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 18 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: Q07157 HGNC Approved Gene Symbol: TJP1 
Ensembl ENSG00000104067 
Synonyms : ZO-1, MGC133289, DKFZp686M05161
HgncId : HGNC:11827  Omim: 601009 
Refseq: NM_003257 
 
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

TJP1 Gene Structure

Chromosome: chr15
Genbank ID: NM_003257 Orientation: -
Length coding sequence : 5244 nucleotides.
Regionstartendregion lengthphase at end
UTR
30,114,23230,114,706
Exon30,114,20530,114,231270
Exon30,092,84930,092,905570
Exon30,065,43630,065,5601252
Exon30,064,26730,064,3691030
Exon30,058,46930,058,7452771
Exon30,054,53830,054,6411040
Exon30,053,80430,053,9721691
Exon30,053,34230,053,4891482
Exon30,034,84630,034,9851401
Exon30,033,53530,033,6401062
Exon30,029,46830,029,6181510
Exon30,026,47830,026,5861091
Exon30,025,29830,025,5172202
Exon30,024,83530,025,0191851
Exon30,024,63730,024,732961
Exon30,020,14130,020,223830
Exon30,018,98530,019,1952111
Exon30,018,58330,018,6831010
Exon30,012,56230,012,9123510
Exon30,011,98130,012,2202400
Exon30,010,47030,011,3428730
Exon30,010,22530,010,322982
Exon30,008,81530,009,0422282
Exon30,003,03530,003,2041701
Exon30,000,76330,001,2404782
Exon29,997,73229,997,9492181
Exon29,996,42629,996,509841
Exon29,993,79929,993,893950
UTR
29,991,57129,993,798