TAF1 - TATA-box binding protein associated factor 1

 

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The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 16 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: P21675 HGNC Approved Gene Symbol: TAF1 
Previous Symbols: TAF2A, BA2R, CCG1, CCGS, DYT3 Ensembl ENSG00000147133 
Synonyms : NSCL2, TAFII250, KAT4, DYT3/TAF1 Previous Names: "TATA box binding protein (TBP)-associated factor, RNA polymerase II, A, 250kD", "dystonia 3 (with Parkinsonism)", "TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa"
HgncId : HGNC:11535  Omim: 313650 
Refseq: NM_004606 
 
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

TAF1 Gene Structure

Chromosome: chrX
Genbank ID: NM_004606 Orientation: +
Length coding sequence : 5679 nucleotides.
Regionstartendregion lengthphase at end
UTR70,586,08870,586,164
Exon70,586,16570,586,3441800
Exon70,587,34970,587,4631151
Exon70,587,90470,588,0201171
Exon70,595,01770,595,1361201
Exon70,596,80070,597,0412420
Exon70,597,45370,597,6712190
Exon70,598,08570,598,3032190
Exon70,598,67470,598,8812081
Exon70,601,59370,601,7691771
Exon70,602,38670,602,5131280
Exon70,602,61170,602,7181080
Exon70,602,84170,603,0141740
Exon70,603,81270,603,9851740
Exon70,604,79570,604,8991050
Exon70,607,11170,607,3112010
Exon70,608,08770,608,2281421
Exon70,608,58870,608,7181310
Exon70,609,43570,609,515810
Exon70,612,41970,612,5681500
Exon70,612,72570,612,8441200
Exon70,613,15170,613,3261762
Exon70,613,91770,614,0951791
Exon70,617,10370,617,3162142
Exon70,618,42270,618,5871660
Exon70,621,37870,621,5892122
Exon70,626,48870,626,5961090
Exon70,627,42470,627,522990
Exon70,627,82470,628,0011781
Exon70,641,15970,641,226680
Exon70,642,96770,643,0891230
Exon70,643,82470,643,916930
Exon70,644,00470,644,088851
Exon70,674,02070,674,087680
Exon70,674,59170,674,7071170
Exon70,678,09170,678,2161260
Exon70,679,40270,679,5581571
Exon70,680,47670,680,6531782
Exon70,683,67470,683,8962230
UTR70,683,89770,685,855