STX5 - syntaxin 5

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Find PDB entities (unique chains) for STX5 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: Q13190 HGNC Approved Gene Symbol: STX5 
Previous Symbols: STX5A Ensembl ENSG00000162236 
Synonyms : SED5 Previous Names: "syntaxin 5A"
HgncId : HGNC:11440  Omim: 603189 
Refseq: NM_003164  GenBank: U26648 
 
Genomic coordinates: Cytogenetic location: 11q12.3 reset view
Currently highlighted: Genomic position: chr11:62,827,631 View in genomic position mapping tool
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

STX5 Gene Structure

Chromosome: chr11
Genbank ID: NM_003164 Orientation: -
Length coding sequence : 1065 nucleotides.
Regionstartendregion lengthphase at end
UTR62,831,95362,832,091
UTR
62,831,24462,831,262
Exon62,831,01962,831,2432250
Exon62,827,56162,827,631712
Exon62,827,34362,827,398561
Exon62,827,15562,827,225710
Exon62,825,42362,825,5391170
Exon62,825,28362,825,339570
Exon62,825,03662,825,117821
Exon62,824,45962,824,5651070
Exon62,824,16662,824,2871222
Exon62,807,46962,807,6281600
UTR
62,806,86062,807,468