SPOP - speckle type BTB/POZ protein

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 20 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: O43791 HGNC Approved Gene Symbol: SPOP 
Ensembl ENSG00000121067 
Synonyms : TEF2, BTBD32 Previous Names: "speckle-type POZ protein"
HgncId : HGNC:11254  Omim: 602650 
Refseq: NM_003563  GenBank: AJ000644 
 
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

SPOP Gene Structure

Chromosome: chr17
Genbank ID: NM_003563 Orientation: -
Length coding sequence : 1122 nucleotides.
Regionstartendregion lengthphase at end
UTR47,755,29447,755,525
UTR47,753,25647,753,378
UTR
47,700,17347,700,238
Exon47,700,09547,700,172780
Exon47,699,30847,699,4291222
Exon47,696,59647,696,7471521
Exon47,696,34347,696,4701280
Exon47,688,64247,688,8191781
Exon47,685,23647,685,291560
Exon47,684,61247,684,7341230
Exon47,679,22747,679,3691432
Exon47,677,74047,677,8841450
UTR
47,676,24647,677,739