SPHK1 - sphingosine kinase 1

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 5 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: Q9NYA1 HGNC Approved Gene Symbol: SPHK1 
Ensembl ENSG00000176170 
Synonyms : SPHK
HgncId : HGNC:11240  Omim: 603730 
Refseq: NM_182965, NM_021972  GenBank: BC030553 
 
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

SPHK1 Gene Structure

Chromosome: chr17
Genbank ID: NM_001142601 Orientation: +
Length coding sequence : 1152 nucleotides.
Regionstartendregion lengthphase at end
UTR74,381,53174,381,725
Exon74,381,72674,381,735101
Exon74,382,06674,382,2181531
Exon74,382,30274,382,396950
Exon74,382,47474,382,5891162
Exon74,382,88774,383,6677810
UTR74,383,66874,383,941