SORT1 - sortilin 1

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 9 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: Q99523 HGNC Approved Gene Symbol: SORT1 
Ensembl ENSG00000134243 
Synonyms : Gp95, NT3
HgncId : HGNC:11186  Omim: 602458 
Refseq: NM_002959  GenBank: BC023542 
 
Genomic coordinates: Cytogenetic location: 1p13.3 reset view
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

SORT1 Gene Structure

Chromosome: chr1
Genbank ID: NM_002959 Orientation: -
Length coding sequence : 2493 nucleotides.
Regionstartendregion lengthphase at end
UTR
109,940,515109,940,567
Exon109,940,209109,940,5143060
Exon109,912,152109,912,211600
Exon109,910,030109,910,103742
Exon109,897,989109,898,0911030
Exon109,896,989109,897,1531650
Exon109,893,551109,893,624742
Exon109,890,105109,890,154501
Exon109,888,373109,888,5031310
Exon109,884,636109,884,7801451
Exon109,883,346109,883,5011561
Exon109,878,862109,878,9681070
Exon109,870,121109,870,2231031
Exon109,869,614109,869,7821692
Exon109,867,521109,867,7111911
Exon109,865,554109,865,7431902
Exon109,860,475109,860,5911172
Exon109,859,472109,859,5801090
Exon109,857,294109,857,4001072
Exon109,856,883109,857,0061240
Exon109,856,665109,856,679150
UTR
109,852,188109,856,664