SF3B2 - splicing factor 3b subunit 2

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 8 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: Q13435 HGNC Approved Gene Symbol: SF3B2 
Ensembl ENSG00000087365 
Synonyms : SAP145, SF3b1, Cus1, SF3b145 Previous Names: "splicing factor 3b, subunit 2, 145kD", "splicing factor 3b, subunit 2, 145kDa"
HgncId : HGNC:10769  Omim: 605591 
GenBank: U41371 
 
Genomic coordinates: Cytogenetic location: 11q13.1 reset view
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

SF3B2 Gene Structure

Chromosome: chr11
Genbank ID: NM_006842 Orientation: +
Length coding sequence : 2685 nucleotides.
Regionstartendregion lengthphase at end
UTR65,819,81565,819,855
Exon65,819,85665,819,9881331
Exon65,820,14465,820,190470
Exon65,820,49865,820,575780
Exon65,822,54765,822,7862400
Exon65,823,00665,823,056510
Exon65,824,30965,824,4261181
Exon65,824,73765,824,8461100
Exon65,825,52565,825,621971
Exon65,825,78565,825,876920
Exon65,826,30165,826,5162160
Exon65,826,67265,826,8091380
Exon65,826,98665,827,066810
Exon65,827,25365,827,4802280
Exon65,828,05365,828,2021500
Exon65,829,15765,829,246900
Exon65,829,36265,829,4691080
Exon65,830,48065,830,5871080
Exon65,830,87165,831,0131432
Exon65,831,09965,831,2001022
Exon65,835,41765,835,5161000
Exon65,835,61965,835,8041860
Exon65,836,14565,836,216720
UTR65,836,21765,836,382