SDC4 - syndecan 4

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 4 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: P31431 HGNC Approved Gene Symbol: SDC4 
Ensembl ENSG00000124145 
Synonyms : SYND4, amphiglycan, ryudocan Previous Names: "syndecan 4 (amphiglycan, ryudocan)"
HgncId : HGNC:10661  Omim: 600017 
Refseq: NM_002999  GenBank: X67016, D13292 
 
Genomic coordinates: Cytogenetic location: 20q13.12 reset view
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

SDC4 Gene Structure

Chromosome: chr20
Genbank ID: NM_002999 Orientation: -
Length coding sequence : 594 nucleotides.
Regionstartendregion lengthphase at end
UTR
43,977,02543,977,064
Exon43,976,96543,977,024600
Exon43,964,42243,964,5601391
Exon43,961,66343,961,709470
Exon43,959,00643,959,2041991
Exon43,955,90443,956,0551520
UTR
43,953,92943,955,903