RHO - rhodopsin

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 5 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: P08100 HGNC Approved Gene Symbol: RHO 
Previous Symbols: RP4 Ensembl ENSG00000163914 
Synonyms : OPN2, CSNBAD1 Previous Names: "retinitis pigmentosa 4, autosomal dominant"
HgncId : HGNC:10012  Omim: 180380 
Refseq: NM_000539  GenBank: AB065668 
 
Genomic coordinates: Cytogenetic location: 3q22.1 reset view
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

RHO Gene Structure

Chromosome: chr3
Genbank ID: NM_000539 Orientation: +
Length coding sequence : 1044 nucleotides.
Regionstartendregion lengthphase at end
UTR129,247,481129,247,576
Exon129,247,577129,247,9373611
Exon129,249,719129,249,8871692
Exon129,251,094129,251,2591660
Exon129,251,376129,251,6152400
Exon129,252,451129,252,5611110
UTR129,252,562129,254,187