PTPN5 - protein tyrosine phosphatase, non-receptor type 5

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 7 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: P54829 HGNC Approved Gene Symbol: PTPN5 
Ensembl ENSG00000110786 
Synonyms : STEP, PTPSTEP, STEP61 Previous Names: "protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched)"
HgncId : HGNC:9657  Omim: 176879 
Refseq: NM_001039970  GenBank: BC064807 
 
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

PTPN5 Gene Structure

Chromosome: chr11
Genbank ID: NM_001039970 Orientation: -
Length coding sequence : 1599 nucleotides.
Regionstartendregion lengthphase at end
UTR18,813,07118,813,389
UTR
18,793,50618,793,618
Exon18,793,48618,793,505202
Exon18,787,35418,787,430771
Exon18,765,55318,765,7461940
Exon18,764,86918,764,880120
Exon18,764,53918,764,622840
Exon18,763,80918,764,0502422
Exon18,762,15018,762,3391900
Exon18,759,42718,759,511851
Exon18,755,10318,755,182800
Exon18,754,78218,754,9191380
Exon18,754,13918,754,2491110
Exon18,751,20518,751,3651612
Exon18,751,00018,751,1131142
Exon18,750,48118,750,574940
UTR
18,749,47518,750,480