PKD2 - polycystin 2, transient receptor potential cation channel

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 12 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: Q13563 HGNC Approved Gene Symbol: PKD2 
Ensembl ENSG00000118762 
Synonyms : PKD4, PC2, Pc-2, TRPP2 Previous Names: "polycystic kidney disease 2 (autosomal dominant)"
HgncId : HGNC:9009  Omim: 173910 
Refseq: NM_000297  GenBank: U50928 
 
Genomic coordinates: Cytogenetic location: 4q22.1 reset view
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

PKD2 Gene Structure

Chromosome: chr4
Genbank ID: NM_000297 Orientation: +
Length coding sequence : 2904 nucleotides.
Regionstartendregion lengthphase at end
UTR88,928,79888,928,885
Exon88,928,88688,929,4805951
Exon88,940,61088,940,7231141
Exon88,957,37288,957,5051340
Exon88,959,40388,959,6532512
Exon88,964,38588,964,6092252
Exon88,967,79488,968,0222290
Exon88,973,14388,973,3101680
Exon88,977,23888,977,4191822
Exon88,979,13588,979,2551210
Exon88,983,05888,983,156990
Exon88,986,52688,986,6471222
Exon88,986,91488,987,0311180
Exon88,989,05088,989,2131642
Exon88,995,96488,996,1111480
Exon88,996,61088,996,8462370
UTR88,996,84788,998,931