PATL1 - PAT1 homolog 1, processing body mRNA decay factor

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 3 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: Q86TB9 HGNC Approved Gene Symbol: PATL1 
Ensembl ENSG00000166889 
Synonyms : FLJ36874, Pat1b Previous Names: "protein associated with topoisomerase II homolog 1 (yeast)"
HgncId : HGNC:26721  Omim: 614660 
Refseq: NM_152716  GenBank: AK094193 
 
Genomic coordinates: Cytogenetic location: 11q12.1 reset view
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

PATL1 Gene Structure

Chromosome: chr11
Genbank ID: NM_152716 Orientation: -
Length coding sequence : 2310 nucleotides.
Regionstartendregion lengthphase at end
UTR
59,436,36959,436,511
Exon59,436,35459,436,368150
Exon59,434,32659,434,4371121
Exon59,426,72559,426,9422180
Exon59,426,33959,426,419810
Exon59,425,00359,425,1971950
Exon59,423,97259,424,0731020
Exon59,423,42959,423,518900
Exon59,422,99659,423,2132182
Exon59,421,45659,421,545902
Exon59,420,31159,420,4911810
Exon59,419,93759,420,0601241
Exon59,419,01759,419,114980
Exon59,418,22759,418,286600
Exon59,416,93559,417,0831492
Exon59,415,22759,415,3861600
Exon59,410,35359,410,5081560
Exon59,406,76559,406,856922
Exon59,406,52159,406,6701502
Exon59,405,86359,405,884220
UTR
59,404,19259,405,862