NUP85 - nucleoporin 85

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 1 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: Q9BW27 HGNC Approved Gene Symbol: NUP85 
Ensembl ENSG00000125450 
Synonyms : NUP75, FLJ12549 Previous Names: "nucleoporin 85kDa"
HgncId : HGNC:8734  Omim: 170285 
Refseq: NM_024844  GenBank: AF514995 
 
Genomic coordinates: Cytogenetic location: 17q25 reset view
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

NUP85 Gene Structure

Chromosome: chr17
Genbank ID: NM_024844 Orientation: +
Length coding sequence : 1968 nucleotides.
Regionstartendregion lengthphase at end
UTR73,201,54473,201,856
Exon73,201,85773,201,889330
Exon73,204,62273,204,715941
Exon73,205,91873,206,0801632
Exon73,208,08773,208,157711
Exon73,209,17173,209,214440
Exon73,211,84973,211,918701
Exon73,214,28073,214,4011220
Exon73,221,19873,221,3321350
Exon73,221,43773,221,5591230
Exon73,221,79373,221,9241320
Exon73,222,14673,222,2521072
Exon73,227,43573,227,518842
Exon73,227,66873,227,733662
Exon73,227,92373,228,0741521
Exon73,228,94673,229,0631182
Exon73,229,15373,229,2531011
Exon73,230,73273,230,8831520
Exon73,231,19573,231,2961020
Exon73,231,67373,231,7741020
UTR73,231,77573,231,854