NUP107 - nucleoporin 107

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 4 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: P57740 HGNC Approved Gene Symbol: NUP107 
Ensembl ENSG00000111581 
Synonyms : NUP84 Previous Names: "nucleoporin 107kDa"
HgncId : HGNC:29914  Omim: 607617 
Refseq: NM_020401  GenBank: AK055629 
 
Genomic coordinates: Cytogenetic location: 12q15 reset view
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

NUP107 Gene Structure

Chromosome: chr12
Genbank ID: NM_020401 Orientation: +
Length coding sequence : 2775 nucleotides.
Regionstartendregion lengthphase at end
UTR69,080,73069,080,845
Exon69,080,84669,080,85382
Exon69,082,74269,082,833921
Exon69,083,31369,083,399871
Exon69,084,41169,084,5261160
Exon69,085,74869,085,8921451
Exon69,090,59969,090,7021040
Exon69,094,50669,094,6331282
Exon69,096,51669,096,564490
Exon69,103,01869,103,089720
Exon69,103,78569,103,873892
Exon69,107,51069,107,588790
Exon69,109,40769,109,5201140
Exon69,113,12169,113,211911
Exon69,113,35869,113,434770
Exon69,114,89869,114,957600
Exon69,115,62169,115,7661462
Exon69,115,88469,115,932490
Exon69,119,50769,119,576701
Exon69,120,27969,120,3971190
Exon69,121,13169,121,169390
Exon69,124,89069,125,0401511
Exon69,125,38769,125,4991130
Exon69,126,41769,126,5191031
Exon69,127,23269,127,3921610
Exon69,128,48869,128,6131260
Exon69,129,01169,129,1241140
Exon69,135,59369,135,7601680
Exon69,136,13569,136,2421080
UTR69,136,24369,136,473