LDLR - low density lipoprotein receptor

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 32 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: P01130 HGNC Approved Gene Symbol: LDLR 
Ensembl ENSG00000130164 
Synonyms : LDLCQ2
HgncId : HGNC:6547  Omim: 606945 
GenBank: AY114155 
 
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

LDLR Gene Structure

Chromosome: chr19
Genbank ID: NM_000527 Orientation: +
Length coding sequence : 2580 nucleotides.
Regionstartendregion lengthphase at end
UTR11,200,03711,200,224
Exon11,200,22511,200,291671
Exon11,210,89911,211,0211231
Exon11,213,34011,213,4621231
Exon11,215,89611,216,2763811
Exon11,217,24111,217,3631231
Exon11,218,06811,218,1901231
Exon11,221,32811,221,4471201
Exon11,222,19011,222,3151261
Exon11,223,95411,224,1251722
Exon11,224,21111,224,4382282
Exon11,226,77011,226,8881191
Exon11,227,53511,227,6741400
Exon11,230,76811,230,9091421
Exon11,231,04611,231,1981531
Exon11,233,85011,234,0201711
Exon11,238,68411,238,761781
Exon11,240,18911,240,3461580
Exon11,241,95711,241,992360
UTR11,241,99311,244,505