ITGA1 - integrin subunit alpha 1

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 8 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: P56199 HGNC Approved Gene Symbol: ITGA1 
Ensembl ENSG00000213949 
Synonyms : VLA1, CD49a Previous Names: "integrin, alpha 1"
HgncId : HGNC:6134  Omim: 192968 
Refseq: NM_181501  GenBank: X68742 
 
Genomic coordinates: Cytogenetic location: 5q11.2 reset view
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

ITGA1 Gene Structure

Chromosome: chr5
Genbank ID: NM_181501 Orientation: +
Length coding sequence : 3537 nucleotides.
Regionstartendregion lengthphase at end
UTR52,084,13552,084,187
Exon52,084,18852,084,248611
Exon52,145,19952,145,3191212
Exon52,157,28152,157,3931131
Exon52,160,59752,160,685890
Exon52,160,80552,160,9161121
Exon52,161,52452,161,6511280
Exon52,177,70552,177,8531492
Exon52,183,64752,183,7971510
Exon52,189,50652,189,6711661
Exon52,193,28652,193,359740
Exon52,194,06952,194,2131451
Exon52,201,59352,201,7381460
Exon52,204,72852,204,8711440
Exon52,205,99252,206,2492580
Exon52,211,29452,211,4241312
Exon52,214,56252,214,7281671
Exon52,216,16252,216,2981370
Exon52,218,60752,218,7171110
Exon52,221,10852,221,3172100
Exon52,223,41452,223,494810
Exon52,225,45552,225,531772
Exon52,227,87752,227,966902
Exon52,229,72452,229,8261030
Exon52,233,23152,233,3441140
Exon52,235,42052,235,5211020
Exon52,235,67052,235,7741050
Exon52,240,77352,240,865930
Exon52,243,17552,243,2911170
Exon52,248,23752,248,281450
UTR52,248,28252,249,485