ITCH - itchy E3 ubiquitin protein ligase

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 12 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: Q96J02 HGNC Approved Gene Symbol: ITCH 
Ensembl ENSG00000078747 
Synonyms : AIP4 Previous Names: "itchy (mouse homolog) E3 ubiquitin protein ligase", "itchy E3 ubiquitin protein ligase homolog (mouse)"
HgncId : HGNC:13890  Omim: 606409 
GenBank: AF095745 
 
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

ITCH Gene Structure

Chromosome: chr20
Genbank ID: NM_001257137 Orientation: +
Length coding sequence : 2709 nucleotides.
Regionstartendregion lengthphase at end
UTR32,981,59632,981,617
Exon32,981,61832,981,687701
Exon32,996,45732,996,5981422
Exon33,000,32133,000,4451251
Exon33,001,54833,001,6851381
Exon33,004,92333,005,0451231
Exon33,012,28633,012,331462
Exon33,026,27933,026,4361581
Exon33,027,96033,028,1491902
Exon33,030,01333,030,108962
Exon33,033,09233,033,2661750
Exon33,037,21633,037,285701
Exon33,045,19533,045,279852
Exon33,049,89833,050,0261292
Exon33,057,85333,057,925730
Exon33,059,24933,059,320720
Exon33,065,57733,065,665892
Exon33,067,43533,067,5941600
Exon33,068,40433,068,5371342
Exon33,068,87133,069,0111412
Exon33,077,07133,077,1911210
Exon33,077,62733,077,7311050
Exon33,080,30633,080,402971
Exon33,092,13633,092,208732
Exon33,095,50033,095,5991000
UTR33,095,60033,099,578