HMGB1 - high mobility group box 1
Gene View
The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.
Cross References
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UniProt:
P09429
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HGNC Approved Gene Symbol: HMGB1 |
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Previous Symbols:
HMG1
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Ensembl
ENSG00000189403
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Synonyms :
HMG3, SBP-1, DKFZp686A04236
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Previous Names:
"high-mobility group (nonhistone chromosomal) protein 1", "high-mobility group box 1"
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HgncId :
HGNC:4983
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Omim:
163905
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Refseq:
NM_002128
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GenBank:
D63874
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| Genomic coordinates: |
Cytogenetic location:
13q12.3
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chr13:31,035,493-31,037,817
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Legend
The genome browser is based on Biodalliance browser
The tracks display the following information:
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Track
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Info
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Data Source
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| Genome |
A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location,
or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue).
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GRCh37 assembly
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| PDB |
The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows
additional information and links for more information.
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RCSB PDB
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| Gene |
This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions.
The black lines connecting boxes represent introns.
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Gencode
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| Repeats |
This track shows various repeat regions that have been annotated along the genome.
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UCSC genome browser
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| Conservation |
PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome.
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UCSC genome browser
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HMGB1 Gene Structure
Chromosome: chr13
Genbank ID: NM_002128
Orientation: -
Length coding sequence : 645 nucleotides.
| Region | start | end | region length | phase at end |
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| UTR | 31,039,932 | 31,040,102 | | |
UTR | 31,037,818 | 31,037,831 | | |
| Exon | 31,037,668 | 31,037,817 | 150 | 0 |
| Exon | 31,037,344 | 31,037,489 | 146 | 2 |
| Exon | 31,036,675 | 31,036,849 | 175 | 0 |
| Exon | 31,035,494 | 31,035,670 | 177 | 0 |
UTR | 31,032,053 | 31,035,493 | | |