HMGB1 - high mobility group box 1

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 8 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: P09429 HGNC Approved Gene Symbol: HMGB1 
Previous Symbols: HMG1 Ensembl ENSG00000189403 
Synonyms : HMG3, SBP-1, DKFZp686A04236 Previous Names: "high-mobility group (nonhistone chromosomal) protein 1", "high-mobility group box 1"
HgncId : HGNC:4983  Omim: 163905 
Refseq: NM_002128  GenBank: D63874 
 
Genomic coordinates: Cytogenetic location: 13q12.3 reset view
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

HMGB1 Gene Structure

Chromosome: chr13
Genbank ID: NM_002128 Orientation: -
Length coding sequence : 645 nucleotides.
Regionstartendregion lengthphase at end
UTR31,039,93231,040,102
UTR
31,037,81831,037,831
Exon31,037,66831,037,8171500
Exon31,037,34431,037,4891462
Exon31,036,67531,036,8491750
Exon31,035,49431,035,6701770
UTR
31,032,05331,035,493