HCFC1 - host cell factor C1

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 12 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: P51610 HGNC Approved Gene Symbol: HCFC1 
Previous Symbols: HFC1, MRX3 Ensembl ENSG00000172534 
Synonyms : HCF-1, HCF1, CFF, VCAF, MGC70925, PPP1R89 Previous Names: "mental retardation, X-linked 3", "host cell factor C1 (VP16-accessory protein)"
HgncId : HGNC:4839  Omim: 300019 
Refseq: NM_005334 
 
Genomic coordinates: Cytogenetic location: Xq28 reset view
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

HCFC1 Gene Structure

Chromosome: chrX
Genbank ID: NM_005334 Orientation: -
Length coding sequence : 6105 nucleotides.
Regionstartendregion lengthphase at end
UTR
153,236,292153,236,819
Exon153,236,099153,236,2911931
Exon153,230,029153,230,1771490
Exon153,229,575153,229,7351612
Exon153,228,676153,228,8842091
Exon153,227,673153,227,757852
Exon153,226,993153,227,0991071
Exon153,225,686153,225,8651801
Exon153,225,253153,225,6123601
Exon153,224,782153,224,9421610
Exon153,224,020153,224,2171980
Exon153,223,476153,223,7002250
Exon153,223,233153,223,3371050
Exon153,222,765153,222,9842201
Exon153,222,369153,222,5111430
Exon153,222,076153,222,2141391
Exon153,221,642153,221,8622210
Exon153,219,517153,220,99314771
Exon153,219,058153,219,2211640
Exon153,217,965153,218,4094451
Exon153,217,292153,217,6093181
Exon153,217,040153,217,1581190
Exon153,216,801153,216,9381380
Exon153,216,264153,216,4491860
Exon153,215,694153,215,9943011
Exon153,215,004153,215,067642
Exon153,214,798153,214,837400
UTR
153,213,008153,214,797