GPC1 - glypican 1

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 4 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: P35052 HGNC Approved Gene Symbol: GPC1 
Ensembl ENSG00000063660 
Synonyms : glypican
HgncId : HGNC:4449  Omim: 600395 
Refseq: NM_002081  GenBank: AK095397 
 
Genomic coordinates: Cytogenetic location: 2q37.3 reset view
Currently highlighted: Genomic position: chr2:241,404,627 View in genomic position mapping tool
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

GPC1 Gene Structure

Chromosome: chr2
Genbank ID: NM_002081 Orientation: +
Length coding sequence : 1674 nucleotides.
Regionstartendregion lengthphase at end
UTR241,375,114241,375,335
Exon241,375,336241,375,5011661
Exon241,398,447241,398,6051591
Exon241,401,608241,401,9993920
Exon241,402,764241,402,9291661
Exon241,404,033241,404,1631310
Exon241,404,273241,404,3921200
Exon241,404,494241,404,6271342
Exon241,404,890241,405,0651761
Exon241,405,475241,405,7072330
UTR241,405,708241,407,495