DDX39B - DExD-box helicase 39B

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 5 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: Q13838 HGNC Approved Gene Symbol: DDX39B 
Previous Symbols: BAT1 Ensembl ENSG00000198563 
Synonyms : D6S81E, UAP56 Previous Names: "HLA-B associated transcript 1", "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B", "DEAD-box helicase 39B"
HgncId : HGNC:13917  Omim: 142560 
Refseq: NM_004640  GenBank: Z37166 
 
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

DDX39B Gene Structure

Chromosome: chr6_ssto_hap7
Genbank ID: NM_004640 Orientation: -
Length coding sequence : 1284 nucleotides.
Regionstartendregion lengthphase at end
UTR2,840,5312,841,057
UTR
2,839,1152,839,246
Exon2,838,9042,839,1142111
Exon2,837,7292,837,8561280
Exon2,837,3452,837,437930
Exon2,835,0822,835,2651841
Exon2,833,9492,834,0671190
Exon2,831,3622,831,4931320
Exon2,829,8782,829,9871102
Exon2,829,6352,829,7791450
Exon2,829,3612,829,5081481
Exon2,829,0162,829,032170
UTR
2,828,8012,829,015