COL9A2 - collagen type IX alpha 2 chain

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 4 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: Q14055 HGNC Approved Gene Symbol: COL9A2 
Previous Symbols: EDM2 Ensembl ENSG00000049089 
Synonyms : MED Previous Names: "collagen, type IX, alpha 2"
HgncId : HGNC:2218  Omim: 120260 
Refseq: NM_001852  GenBank: M95610 
 
Genomic coordinates: Cytogenetic location: 1p34.2 reset view
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

COL9A2 Gene Structure

Chromosome: chr1
Genbank ID: NM_001852 Orientation: -
Length coding sequence : 2067 nucleotides.
Regionstartendregion lengthphase at end
UTR
40,782,87040,782,939
Exon40,782,79540,782,869750
Exon40,781,26240,781,336750
Exon40,780,02440,780,059360
Exon40,779,87740,779,939630
Exon40,778,40340,778,456540
Exon40,778,24640,778,281360
Exon40,778,12840,778,151240
Exon40,777,73140,777,784540
Exon40,777,33440,777,387540
Exon40,777,17240,777,219480
Exon40,776,90240,776,958570
Exon40,776,76540,776,818540
Exon40,776,38640,776,439540
Exon40,775,93640,775,989540
Exon40,775,78340,775,836540
Exon40,775,61040,775,663540
Exon40,773,86440,773,917540
Exon40,773,37540,773,428540
Exon40,773,11840,773,171540
Exon40,771,81540,771,859450
Exon40,771,38740,771,440540
Exon40,770,46640,770,519540
Exon40,770,14840,770,201540
Exon40,769,99240,770,063720
Exon40,769,73640,769,771360
Exon40,769,60040,769,644450
Exon40,769,47940,769,511330
Exon40,769,20240,769,3481470
Exon40,768,80340,768,857551
Exon40,768,29340,768,4811891
Exon40,767,48440,767,561781
Exon40,766,85440,767,0532000
UTR
40,766,16340,766,853