COL1A1 - collagen type I alpha 1 chain

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 17 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: P02452 HGNC Approved Gene Symbol: COL1A1 
Ensembl ENSG00000108821 
Synonyms : OI4 Previous Names: "collagen, type I, alpha 1"
HgncId : HGNC:2197  Omim: 120150 
Refseq: NM_000088  GenBank: Z74615 
 
Genomic coordinates: Cytogenetic location: 17q21.33 reset view
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

COL1A1 Gene Structure

Chromosome: chr17
Genbank ID: NM_000088 Orientation: -
Length coding sequence : 4392 nucleotides.
Regionstartendregion lengthphase at end
UTR
48,278,87548,279,000
Exon48,278,77248,278,8741031
Exon48,277,11448,277,3081951
Exon48,276,91748,276,951350
Exon48,276,77948,276,814360
Exon48,276,58748,276,6881020
Exon48,275,79448,275,865720
Exon48,275,52248,275,566450
Exon48,275,31048,275,363540
Exon48,275,09348,275,146540
Exon48,274,54148,274,594540
Exon48,274,37148,274,424540
Exon48,273,97848,274,031540
Exon48,273,84548,273,889450
Exon48,273,67548,273,728540
Exon48,273,51648,273,560450
Exon48,273,28448,273,337540
Exon48,272,92848,273,026990
Exon48,272,79548,272,839450
Exon48,272,59348,272,691990
Exon48,272,40848,272,461540
Exon48,272,08248,272,1891080
Exon48,271,93448,271,987540
Exon48,271,71048,271,808990
Exon48,271,49148,271,544540
Exon48,271,30448,271,402990
Exon48,270,35548,270,408540
Exon48,270,15848,270,211540
Exon48,270,00148,270,054540
Exon48,269,83648,269,889540
Exon48,269,34148,269,385450
Exon48,269,14948,269,247990
Exon48,268,74448,268,8511080
Exon48,268,17848,268,2851080
Exon48,267,90448,267,957540
Exon48,267,68848,267,741540
Exon48,267,36248,267,4691080
Exon48,267,22048,267,273540
Exon48,267,04048,267,093540
Exon48,266,73848,266,8991620
Exon48,266,52948,266,6361080
Exon48,266,26448,266,3711080
Exon48,266,10348,266,156540
Exon48,265,89148,265,9981080
Exon48,265,45748,265,510540
Exon48,265,23748,265,3441080
Exon48,264,84548,264,898540
Exon48,264,37648,264,4831080
Exon48,264,00148,264,2832831
Exon48,263,67848,263,8681910
Exon48,263,13948,263,3812430
Exon48,262,86348,263,0091470
UTR
48,261,45748,262,862