CACNA1C - calcium voltage-gated channel subunit alpha1 C

 

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The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 12 View list of all current human gene IDs
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Cross References
UniProt: Q13936 HGNC Approved Gene Symbol: CACNA1C 
Previous Symbols: CCHL1A1, CACNL1A1 Ensembl ENSG00000151067 
Synonyms : Cav1.2, CACH2, CACN2, TS, LQT8 Previous Names: "calcium channel, voltage-dependent, L type, alpha 1C subunit"
HgncId : HGNC:1390  Omim: 114205 
Refseq: NM_000719  GenBank: AF070589 
 
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

CACNA1C Gene Structure

Chromosome: chr12
Genbank ID: NM_000719 Orientation: +
Length coding sequence : 6414 nucleotides.
Regionstartendregion lengthphase at end
UTR2,162,4152,162,728
Exon2,162,7292,162,777491
Exon2,224,3902,224,7113222
Exon2,229,4912,229,5961060
Exon2,558,1422,558,2811402
Exon2,566,7332,566,8721401
Exon2,595,2702,595,4281591
Exon2,602,3562,602,5521970
Exon2,614,0082,614,1111042
Exon2,621,9782,622,1501731
Exon2,659,1092,659,199912
Exon2,666,1172,666,143272
Exon2,675,5882,675,7481611
Exon2,676,7352,676,9602262
Exon2,690,7562,690,9632080
Exon2,691,9882,692,1081211
Exon2,693,6692,693,7831152
Exon2,694,5422,694,6621210
Exon2,695,0012,695,070701
Exon2,702,3792,702,5111332
Exon2,705,0402,705,1691300
Exon2,706,3962,706,455600
Exon2,711,0202,711,1261072
Exon2,714,2472,714,334880
Exon2,714,8452,714,9521080
Exon2,715,7772,715,829532
Exon2,716,1502,716,2961472
Exon2,717,6772,717,8782020
Exon2,719,7072,719,8651590
Exon2,721,0692,721,1791110
Exon2,743,4632,743,546840
Exon2,757,6412,757,673330
Exon2,760,8062,760,9341290
Exon2,763,0012,763,066660
Exon2,764,3132,764,404922
Exon2,773,9912,774,1561660
Exon2,774,7472,774,8741282
Exon2,775,8522,775,948970
Exon2,778,0992,778,2011031
Exon2,783,7072,783,8081021
Exon2,786,2602,786,3871280
Exon2,786,8992,787,0331350
Exon2,788,6102,788,9623532
Exon2,791,7162,791,8441292
Exon2,794,9022,795,0081071
Exon2,795,3322,795,4351040
Exon2,797,6132,797,9453330
Exon2,800,0662,800,3653000
UTR2,800,3662,807,115