APLF - aprataxin and PNKP like factor

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 10 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: Q8IW19 HGNC Approved Gene Symbol: APLF 
Previous Symbols: C2orf13 Ensembl ENSG00000169621 
Synonyms : MGC47799, Xip1, ZCCHH1 Previous Names: "chromosome 2 open reading frame 13"
HgncId : HGNC:28724  Omim: 611035 
Refseq: NM_173545  GenBank: BC030711 
 
Genomic coordinates: Cytogenetic location: 2p13.3 reset view
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

APLF Gene Structure

Chromosome: chr2
Genbank ID: NM_173545 Orientation: +
Length coding sequence : 1533 nucleotides.
Regionstartendregion lengthphase at end
UTR68,694,69068,694,863
Exon68,694,86468,694,959960
Exon68,717,32268,717,393720
Exon68,729,86368,730,0351732
Exon68,740,21268,740,3591480
Exon68,740,68068,740,8121331
Exon68,753,19368,753,3741820
Exon68,765,00468,765,3593562
Exon68,772,31968,772,4441262
Exon68,794,47368,794,519471
Exon68,804,95268,805,1542030
UTR68,805,15568,807,294