APAF1 - apoptotic peptidase activating factor 1

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 14 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: O14727 HGNC Approved Gene Symbol: APAF1 
Ensembl ENSG00000120868 
Synonyms : CED4, APAF-1 Previous Names: "apoptotic protease activating factor", "apoptotic peptidase activating factor"
HgncId : HGNC:576  Omim: 602233 
Refseq: NM_181861.1  GenBank: AF013263 
 
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

APAF1 Gene Structure

Chromosome: chr12
Genbank ID: NM_001160 Orientation: +
Length coding sequence : 3582 nucleotides.
Regionstartendregion lengthphase at end
UTR99,042,09699,042,137
Exon99,042,13899,042,2751380
Exon99,042,40499,042,5601571
Exon99,043,26599,043,4621981
Exon99,052,93899,053,1211842
Exon99,056,23499,056,3461131
Exon99,056,45399,056,5841321
Exon99,059,33199,059,5692390
Exon99,059,96899,060,1351680
Exon99,061,29199,061,4221320
Exon99,064,75199,064,8641140
Exon99,065,31399,065,4971852
Exon99,071,20399,071,3291270
Exon99,074,05599,074,1801260
Exon99,076,92199,077,0521320
Exon99,080,52699,080,6511260
Exon99,093,18699,093,3471620
Exon99,100,26399,100,3881260
Exon99,102,36399,102,4821200
Exon99,106,09799,106,2131170
Exon99,109,20599,109,3301260
Exon99,116,97199,117,0901200
Exon99,117,41799,117,5421260
Exon99,119,19399,119,3181260
Exon99,120,95199,121,0941440
Exon99,126,19899,126,3441470
UTR99,126,34599,129,211