Structural Similarities for the Entities in PDB 6QDV

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains 2

Description: U2 snRNA rna | Length: 189

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains D

Description: PRKR-interacting protein 1 protein | Length: 123

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Entity #11 | Chains E

Description: Ligated exons: MINX mRNA rna | Length: 14

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #12 | Chains F

Description: Cactin protein | Length: 122

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Entity #13 | Chains G

Description: Protein FAM32A protein | Length: 60

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Entity #14 | Chains H

Description: Pre-mRNA-splicing factor CWC22 homolog protein | Length: 908

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Entity #15 | Chains I

Description: Intron lariat: MINX RNA rna | Length: 113

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #16 | Chains J

Description: Pleiotropic regulator 1 protein | Length: 320

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Entity #17 | Chains K

Description: SNW domain-containing protein 1 protein | Length: 295

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Entity #18 | Chains L

Description: Protein BUD31 homolog protein | Length: 144

No structure alignment results are available for 6QDV.L explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #19 | Chains M

Description: Pre-mRNA-splicing factor RBM22 protein | Length: 289

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Entity #2 | Chains 5

Description: U5 snRNA rna | Length: 116

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #20 | Chains N

Description: U5 small nuclear ribonucleoprotein 40 kDa protein protein | Length: 306

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Entity #21 | Chains O

Description: Cell division cycle 5-like protein protein | Length: 802

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Entity #22 | Chains P

Description: Spliceosome-associated protein CWC15 homolog protein | Length: 229

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Entity #23 | Chains R

Description: Serine/arginine repetitive matrix protein 2 protein | Length: 26

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Entity #24 | Chains S

Description: Crooked neck-like protein 1 protein | Length: 848

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Entity #25 | Chains T

Description: Pre-mRNA-splicing factor SYF1 protein | Length: 855

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Entity #26 | Chains U

Description: Intron-binding protein aquarius protein | Length: 1485

No structure alignment results are available for 6QDV.U explicitly.

It is represented by chain 4PJ3.A which is 100% sequence identical.

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Entity #27 | Chains V

Description: ATP-dependent RNA helicase DHX8 protein | Length: 1220

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Entity #28 | Chains W

Description: U2 small nuclear ribonucleoprotein A' protein | Length: 162

No structure alignment results are available for 6QDV.W explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #29 | Chains Y

Description: U2 small nuclear ribonucleoprotein B'' protein | Length: 92

No structure alignment results are available for 6QDV.Y explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #3 | Chains 6

Description: U6 snRNA rna | Length: 106

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #30 | Chains Z

Description: NF-kappa-B-activating protein protein | Length: 30

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Entity #31 | Chains b,k

Description: Small nuclear ribonucleoprotein-associated proteins B and B' protein | Length: 82

No structure alignment results are available for 6QDV.b, 6QDV.k explicitly.

These chains are represented by chain 1D3B.b which is 100% sequence identical.

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Entity #32 | Chains c

Description: Pre-mRNA-splicing factor SLU7 protein | Length: 586

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Entity #33 | Chains d,n

Description: Small nuclear ribonucleoprotein Sm D3 protein | Length: 84

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Entity #34 | Chains e,p

Description: Small nuclear ribonucleoprotein E protein | Length: 81

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Entity #35 | Chains f,q

Description: Small nuclear ribonucleoprotein F protein | Length: 72

No structure alignment results are available for 6QDV.f, 6QDV.q explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #36 | Chains g,r

Description: Small nuclear ribonucleoprotein G protein | Length: 73

No structure alignment results are available for 6QDV.g, 6QDV.r explicitly.

These chains are represented by chain 4F7U.G which is 100% sequence identical.

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Entity #37 | Chains h,l

Description: Small nuclear ribonucleoprotein Sm D1 protein | Length: 80

No structure alignment results are available for 6QDV.h, 6QDV.l explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #38 | Chains i

Description: Peptidyl-prolyl cis-trans isomerase-like 1 protein | Length: 164

No structure alignment results are available for 6QDV.i explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #39 | Chains j,m

Description: Small nuclear ribonucleoprotein Sm D2 protein | Length: 118

No structure alignment results are available for 6QDV.j, 6QDV.m explicitly.

These chains are represented by chain 4F7U.B which is 100% sequence identical.

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Entity #4 | Chains 7

Description: Eukaryotic initiation factor 4A-III protein | Length: 390

No structure alignment results are available for 6QDV.7 explicitly.

It is represented by chain 3PEY.A which has more than 40% sequence identity.

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Entity #40 | Chains o

Description: Pre-mRNA-processing factor 17 protein | Length: 513

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Entity #41 | Chains s

Description: Pre-mRNA-splicing factor SPF27 protein | Length: 225

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Entity #42 | Chains t,u,v,w

Description: Pre-mRNA-processing factor 19 protein | Length: 504

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Entity #43 | Chains y

Description: Pre-mRNA-splicing factor SYF2 protein | Length: 144

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Entity #44 | Chains z

Description: Replication stress response regulator SDE2 protein | Length: 34

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Entity #5 | Chains 8

Description: RNA-binding protein 8A protein | Length: 91

No structure alignment results are available for 6QDV.8 explicitly.

It is represented by chain 2J0S.d which is 100% sequence identical.

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Entity #6 | Chains 9

Description: Protein mago nashi homolog 2 protein | Length: 144

No structure alignment results are available for 6QDV.9 explicitly.

It is represented by chain 1OO0.a which has more than 90% sequence identity.

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Entity #7 | Chains A

Description: Pre-mRNA-processing-splicing factor 8 protein | Length: 2335

No structure alignment results are available for 6QDV.A explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #8 | Chains B

Description: U5 small nuclear ribonucleoprotein 200 kDa helicase protein | Length: 1722

No structure alignment results are available for 6QDV.B explicitly.

It is represented by chain 4F92.B which has more than 95% sequence identity.

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Entity #9 | Chains C

Description: 116 kDa U5 small nuclear ribonucleoprotein component protein | Length: 899

No structure alignment results are available for 6QDV.C explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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References