Structural Similarities for the Entities in PDB 6PWE

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A,E

Description: Histone H3 protein | Length: 136

No structure alignment results are available for 6PWE.A, 6PWE.E explicitly.

These chains are represented by chain 1TZY.c which is 100% sequence identical.

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Entity #2 | Chains B,F

Description: Histone H4 protein | Length: 103

No structure alignment results are available for 6PWE.B, 6PWE.F explicitly.

These chains are represented by chain 1TZY.d which has more than 95% sequence identity.

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Entity #3 | Chains C,G

Description: Histone H2A protein | Length: 124

No structure alignment results are available for 6PWE.C, 6PWE.G explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #4 | Chains D,H

Description: Histone H2B protein | Length: 123

No structure alignment results are available for 6PWE.D, 6PWE.H explicitly.

These chains are represented by chain 1TZY.b which has more than 70% sequence identity.

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Entity #5 | Chains I

Description: DNA (147-MER) dna | Length: 147

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #6 | Chains J

Description: DNA (147-MER) dna | Length: 147

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References