Crystal structure of PPARgamma ligand binding domain in complex with SMRT peptide and inverse agonist T0070907

Structural Similarities for the Entities in PDB 6PDZ

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation

A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A,B

Description: Peroxisome proliferator-activated receptor gamma protein | Length: 275

No structure alignment results are available for 6PDZ.A, 6PDZ.B explicitly.

These chains are represented by chain XXXX.null which has more than 95% sequence identity.

Show structure comparison results


View how chain 6PDZ.B compares with the representative chain xxxx. Select a comparison method:

Entity #2 | Chains C,D

Description: Nuclear receptor corepressor 2 protein | Length: 22