Structure of P. aeruginosa ATCC27853 CdnD:HORMA2:Peptide 1 complex

Structural Similarities for the Entities in PDB 6P8U

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A

Description: Nucleotidyltransferase protein | Length: 300

No structure alignment results are available for 6P8U.A explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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View how chain 6P8U.A compares with the representative chain xxxx. Select a comparison method:

Entity #2 | Chains B

Description: HORMA domain containing protein protein | Length: 166


Entity #3 | Chains C

Description: Peptide 1 protein | Length: 10

This entity is too short to be considered for the all vs. all structure alignments.