6OGG

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).


Structural Similarities for the Entities in PDB 6OGG

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains b

Description: 50S ribosomal protein L2 protein | Length: 273

No structure alignment results are available for 6OGG.b explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #10 | Chains m

Description: 50S ribosomal protein L16 protein | Length: 136

No structure alignment results are available for 6OGG.m explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #11 | Chains n

Description: 50S ribosomal protein L17 protein | Length: 127

No structure alignment results are available for 6OGG.n explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #12 | Chains o

Description: 50S ribosomal protein L18 protein | Length: 117

No structure alignment results are available for 6OGG.o explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #13 | Chains p

Description: 50S ribosomal protein L19 protein | Length: 115

No structure alignment results are available for 6OGG.p explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #14 | Chains q

Description: 50S ribosomal protein L20 protein | Length: 118

No structure alignment results are available for 6OGG.q explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #15 | Chains r

Description: 50S ribosomal protein L21 protein | Length: 103

No structure alignment results are available for 6OGG.r explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #16 | Chains s

Description: 50S ribosomal protein L22 protein | Length: 110

No structure alignment results are available for 6OGG.s explicitly.

It is represented by chain 1I4J.a which has more than 50% sequence identity.

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Entity #17 | Chains t

Description: 50S ribosomal protein L23 protein | Length: 100

No structure alignment results are available for 6OGG.t explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #18 | Chains u

Description: 50S ribosomal protein L24 protein | Length: 104

No structure alignment results are available for 6OGG.u explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #19 | Chains v

Description: 50S ribosomal protein L25 protein | Length: 94

No structure alignment results are available for 6OGG.v explicitly.

It is represented by chain 1DFU.p which is 100% sequence identical.

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Entity #2 | Chains c

Description: 50S ribosomal protein L3 protein | Length: 209

No structure alignment results are available for 6OGG.c explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #20 | Chains w

Description: 50S ribosomal protein L27 protein | Length: 85

No structure alignment results are available for 6OGG.w explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #21 | Chains x

Description: 50S ribosomal protein L28 protein | Length: 78

No structure alignment results are available for 6OGG.x explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #22 | Chains y

Description: 50S ribosomal protein L29 protein | Length: 63

No structure alignment results are available for 6OGG.y explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #23 | Chains z

Description: 50S ribosomal protein L30 protein | Length: 59

No structure alignment results are available for 6OGG.z explicitly.

It is represented by chain 1BXY.a which has more than 40% sequence identity.

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Entity #24 | Chains B

Description: 50S ribosomal protein L32 protein | Length: 57

No structure alignment results are available for 6OGG.B explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #25 | Chains C

Description: 50S ribosomal protein L33 protein | Length: 55

No structure alignment results are available for 6OGG.C explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #26 | Chains D

Description: 50S ribosomal protein L34 protein | Length: 46

No structure alignment results are available for 6OGG.D explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #27 | Chains E

Description: 50S ribosomal protein L35 protein | Length: 65

No structure alignment results are available for 6OGG.E explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #28 | Chains F

Description: 50S ribosomal protein L36 protein | Length: 38

No structure alignment results are available for 6OGG.F explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #29 | Chains G

Description: 30S ribosomal protein S2 protein | Length: 241

No structure alignment results are available for 6OGG.G explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #3 | Chains d

Description: 50S ribosomal protein L4 protein | Length: 201

No structure alignment results are available for 6OGG.d explicitly.

It is represented by chain 1DMG.a which has more than 40% sequence identity.

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Entity #30 | Chains H

Description: 30S ribosomal protein S3 protein | Length: 233

No structure alignment results are available for 6OGG.H explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #31 | Chains I

Description: 30S ribosomal protein S4 protein | Length: 206

No structure alignment results are available for 6OGG.I explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #32 | Chains J

Description: 30S ribosomal protein S5 protein | Length: 167

No structure alignment results are available for 6OGG.J explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #33 | Chains K

Description: 30S ribosomal protein S6 protein | Length: 131

No structure alignment results are available for 6OGG.K explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #34 | Chains L

Description: 30S ribosomal protein S7 protein | Length: 156

No structure alignment results are available for 6OGG.L explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #35 | Chains M

Description: 30S ribosomal protein S8 protein | Length: 130

No structure alignment results are available for 6OGG.M explicitly.

It is represented by chain 1SEI.a which has more than 50% sequence identity.

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Entity #36 | Chains N

Description: 30S ribosomal protein S9 protein | Length: 130

No structure alignment results are available for 6OGG.N explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #37 | Chains O

Description: 30S ribosomal protein S10 protein | Length: 103

No structure alignment results are available for 6OGG.O explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #38 | Chains P

Description: 30S ribosomal protein S11 protein | Length: 129

No structure alignment results are available for 6OGG.P explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #39 | Chains Q

Description: 30S ribosomal protein S12 protein | Length: 124

No structure alignment results are available for 6OGG.Q explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #4 | Chains e

Description: 50S ribosomal protein L5 protein | Length: 179

No structure alignment results are available for 6OGG.e explicitly.

It is represented by chain 1IQ4.a which has more than 50% sequence identity.

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Entity #40 | Chains R

Description: 30S ribosomal protein S13 protein | Length: 118

No structure alignment results are available for 6OGG.R explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #41 | Chains S

Description: 30S ribosomal protein S14 protein | Length: 101

No structure alignment results are available for 6OGG.S explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #42 | Chains T

Description: 30S ribosomal protein S15 protein | Length: 89

No structure alignment results are available for 6OGG.T explicitly.

It is represented by chain 4A5U.B which is 100% sequence identical.

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Entity #43 | Chains U

Description: 30S ribosomal protein S16 protein | Length: 82

No structure alignment results are available for 6OGG.U explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #44 | Chains V

Description: 30S ribosomal protein S17 protein | Length: 84

No structure alignment results are available for 6OGG.V explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #45 | Chains W

Description: 30S ribosomal protein S18 protein | Length: 75

No structure alignment results are available for 6OGG.W explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #46 | Chains X

Description: 30S ribosomal protein S19 protein | Length: 92

No structure alignment results are available for 6OGG.X explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #47 | Chains Y

Description: 30S ribosomal protein S20 protein | Length: 87

No structure alignment results are available for 6OGG.Y explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #48 | Chains Z

Description: 30S ribosomal protein S21 protein | Length: 71

No structure alignment results are available for 6OGG.Z explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #49 | Chains a

Description: 50S ribosomal protein L1 protein | Length: 234

No structure alignment results are available for 6OGG.a explicitly.

It is represented by chain 4REO.A which has more than 50% sequence identity.

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Entity #5 | Chains f

Description: 50S ribosomal protein L6 protein | Length: 177

No structure alignment results are available for 6OGG.f explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #50 | Chains 3

Description: 16S ribosomal RNA rna | Length: 1539

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #51 | Chains 1

Description: 23S ribosomal RNA rna | Length: 2903

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #52 | Chains 2

Description: 5S ribosomal RNA rna | Length: 120

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #53 | Chains 5

Description: tRNAfMet rna | Length: 77

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #54 | Chains 4

Description: mRNA rna | Length: 27

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #55 | Chains 8

Description: Peptide chain release factor 2 protein | Length: 371

No structure alignment results are available for 6OGG.8 explicitly.

It is represented by chain 1GQE.a which has more than 95% sequence identity.

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Entity #6 | Chains g

Description: 50S ribosomal protein L9 protein | Length: 149

No structure alignment results are available for 6OGG.g explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #7 | Chains j

Description: 50S ribosomal protein L13 protein | Length: 142

No structure alignment results are available for 6OGG.j explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #8 | Chains k

Description: 50S ribosomal protein L14 protein | Length: 123

No structure alignment results are available for 6OGG.k explicitly.

It is represented by chain 1WHI.a which has more than 50% sequence identity.

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Entity #9 | Chains l

Description: 50S ribosomal protein L15 protein | Length: 144

No structure alignment results are available for 6OGG.l explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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References