Structural Similarities for the Entities in PDB 6MUV

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A,O

Description: 20S proteasome alpha-1 subunit protein | Length: 260

No structure alignment results are available for 6MUV.A, 6MUV.O explicitly.

These chains are represented by chain 5LE5.G which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 6MUV.O compares with the representative chain PDP:5LE5Ga. Select a comparison method:


Entity #10 | Chains J,X

Description: 20S proteasome beta-3 subunit protein | Length: 218

No structure alignment results are available for 6MUV.J, 6MUV.X explicitly.

These chains are represented by chain 5LE5.I which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 6MUV.X compares with the representative chain PDP:5LE5Ia. Select a comparison method:


Entity #11 | Chains K,Y

Description: 20S proteasome beta-4 subunit protein | Length: 195

No structure alignment results are available for 6MUV.K, 6MUV.Y explicitly.

These chains are represented by chain 5LE5.J which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 6MUV.Y compares with the representative chain PDP:5LE5Ja. Select a comparison method:


Entity #12 | Chains L,Z

Description: 20S proteasome beta-5 subunit protein | Length: 211

No structure alignment results are available for 6MUV.L, 6MUV.Z explicitly.

These chains are represented by chain 5LE5.K which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 6MUV.Z compares with the representative chain PDP:5LE5Ka. Select a comparison method:


Entity #13 | Chains M,a

Description: 20S proteasome beta-6 subunit protein | Length: 240

  Loading...

Entity #14 | Chains N,b

Description: 20S proteasome beta-7 subunit protein | Length: 265

  Loading...

Entity #15 | Chains c,d,e,f,g,h,i,j,k,l,m,n,o,p

Description: Proteasome activator PA28 protein | Length: 279

No structure alignment results are available for 6MUV.c, 6MUV.d, 6MUV.e, 6MUV.f, 6MUV.g, 6MUV.h, 6MUV.i, 6MUV.j, 6MUV.k, 6MUV.l, 6MUV.m, 6MUV.n, 6MUV.o, 6MUV.p explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6MUV.p compares with the representative chain xxxx. Select a comparison method:


Entity #2 | Chains B,P

Description: 20S proteasome alpha-2 subunit protein | Length: 235

No structure alignment results are available for 6MUV.B, 6MUV.P explicitly.

These chains are represented by chain 5LE5.A which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 6MUV.P compares with the representative chain PDP:5LE5Aa. Select a comparison method:


Entity #3 | Chains C,Q

Description: 20S proteasome alpha-3 subunit protein | Length: 246

No structure alignment results are available for 6MUV.C, 6MUV.Q explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 6MUV.Q compares with the representative chain xxxx. Select a comparison method:


Entity #4 | Chains D,R

Description: 20S proteasome alpha-4 subunit protein | Length: 241

No structure alignment results are available for 6MUV.D, 6MUV.R explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 6MUV.R compares with the representative chain xxxx. Select a comparison method:


Entity #5 | Chains E,S

Description: 20S proteasome alpha-5 subunit protein | Length: 256

No structure alignment results are available for 6MUV.E, 6MUV.S explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 6MUV.S compares with the representative chain xxxx. Select a comparison method:


Entity #6 | Chains F,T

Description: 20S proteasome alpha-6 subunit protein | Length: 254

  Loading...

Entity #7 | Chains G,U

Description: 20S proteasome alpha-7 subunit protein | Length: 252

  Loading...

Entity #8 | Chains H,V

Description: 20S proteasome beta-1 subunit protein | Length: 252

  Loading...

Entity #9 | Chains I,W

Description: 20S proteasome beta-2 subunit protein | Length: 229

No structure alignment results are available for 6MUV.I, 6MUV.W explicitly.

These chains are represented by chain 5LE5.H which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 6MUV.W compares with the representative chain PDP:5LE5Ha. Select a comparison method:


References