Structural Similarities for the Entities in PDB 6KIX

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,E

Description: Histone H3 protein | Length: 135

No structure alignment results are available for 6KIX.A, 6KIX.E explicitly.

These chains are represented by chain 1TZY.c which has more than 95% sequence identity.

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Entity #10 | Chains T

Description: Set1/Ash2 histone methyltransferase complex subunit ASH2 protein | Length: 534

No structure alignment results are available for 6KIX.T explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #2 | Chains B,F

Description: Histone H4 protein | Length: 102

No structure alignment results are available for 6KIX.B, 6KIX.F explicitly.

These chains are represented by chain 1TZY.d which is 100% sequence identical.

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Entity #3 | Chains C,G

Description: Histone H2A protein | Length: 129

No structure alignment results are available for 6KIX.C, 6KIX.G explicitly.

These chains are represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #4 | Chains D,H

Description: Histone H2B 1.1 protein | Length: 122

No structure alignment results are available for 6KIX.D, 6KIX.H explicitly.

These chains are represented by chain 1TZY.b which has more than 90% sequence identity.

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Entity #5 | Chains I

Description: DNA (145-MER) dna | Length: 145

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #6 | Chains J

Description: DNA (145-MER) dna | Length: 145

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #7 | Chains N

Description: Retinoblastoma-binding protein 5 protein | Length: 538

No structure alignment results are available for 6KIX.N explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #8 | Chains K

Description: Histone-lysine N-methyltransferase 2A protein | Length: 216

No structure alignment results are available for 6KIX.K explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #9 | Chains R

Description: WD repeat-containing protein 5 protein | Length: 334

No structure alignment results are available for 6KIX.R explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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References