Structural Similarities for the Entities in PDB 6IYC

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A

Description: Nicastrin protein | Length: 709

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Entity #2 | Chains B

Description: Presenilin-1 protein | Length: 467

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Entity #3 | Chains C

Description: Gamma-secretase subunit APH-1A protein | Length: 265

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Entity #4 | Chains D

Description: Gamma-secretase subunit PEN-2 protein | Length: 101

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Entity #5 | Chains E

Description: Amyloid-beta A4 protein protein | Length: 104

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References