6HCJ

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs


Structural Similarities for the Entities in PDB 6HCJ

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains 51

Description: 28S ribosomal RNA rna | Length: 3635

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains G2

Description: Ribosomal protein S5 protein | Length: 204

No structure alignment results are available for 6HCJ.G2 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #11 | Chains H2

Description: 40S ribosomal protein S6 protein | Length: 249

No structure alignment results are available for 6HCJ.H2 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #12 | Chains I2

Description: 40S ribosomal protein S7 protein | Length: 194

No structure alignment results are available for 6HCJ.I2 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #13 | Chains J2

Description: eS8 protein | Length: 208

No structure alignment results are available for 6HCJ.J2 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #14 | Chains K2

Description: Ribosomal protein S9 (Predicted) protein | Length: 194

No structure alignment results are available for 6HCJ.K2 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #15 | Chains L2

Description: eS10 protein | Length: 165

No structure alignment results are available for 6HCJ.L2 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #16 | Chains M2

Description: Ribosomal protein S11 protein | Length: 158

No structure alignment results are available for 6HCJ.M2 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #17 | Chains N2

Description: 40S ribosomal protein S12 protein | Length: 132

No structure alignment results are available for 6HCJ.N2 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #18 | Chains O2

Description: uS15 protein | Length: 151

No structure alignment results are available for 6HCJ.O2 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #19 | Chains P2

Description: uS11 protein | Length: 168

No structure alignment results are available for 6HCJ.P2 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #2 | Chains 71

Description: 5S ribosomal RNA rna | Length: 120

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #20 | Chains Q2

Description: uS19 protein | Length: 145

No structure alignment results are available for 6HCJ.Q2 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #21 | Chains R2

Description: Ribosomal protein S16 protein | Length: 146

No structure alignment results are available for 6HCJ.R2 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #22 | Chains S2

Description: eS17 protein | Length: 135

No structure alignment results are available for 6HCJ.S2 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #23 | Chains T2

Description: uS13 protein | Length: 152

No structure alignment results are available for 6HCJ.T2 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #24 | Chains U2

Description: eS19 protein | Length: 145

No structure alignment results are available for 6HCJ.U2 explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #25 | Chains V2

Description: uS10 protein | Length: 119

No structure alignment results are available for 6HCJ.V2 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #26 | Chains W2

Description: eS21 protein | Length: 83

No structure alignment results are available for 6HCJ.W2 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #27 | Chains X2

Description: Ribosomal protein S15a protein | Length: 130

No structure alignment results are available for 6HCJ.X2 explicitly.

It is represented by chain 1I6U.a which has more than 40% sequence identity.

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Entity #28 | Chains Y2

Description: uS12 protein | Length: 143

No structure alignment results are available for 6HCJ.Y2 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #29 | Chains Z2

Description: eS24 protein | Length: 130

No structure alignment results are available for 6HCJ.Z2 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #3 | Chains 81

Description: 5.8S ribosomal RNA rna | Length: 156

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #30 | Chains a2

Description: eS25 protein | Length: 125

No structure alignment results are available for 6HCJ.a2 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #31 | Chains b2

Description: eS26 protein | Length: 115

No structure alignment results are available for 6HCJ.b2 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #32 | Chains c2

Description: 40S ribosomal protein S27 protein | Length: 84

No structure alignment results are available for 6HCJ.c2 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #33 | Chains d2

Description: Ribosomal protein S28 protein | Length: 69

No structure alignment results are available for 6HCJ.d2 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #34 | Chains e2

Description: uS14 protein | Length: 56

No structure alignment results are available for 6HCJ.e2 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #35 | Chains f2

Description: 40S ribosomal protein S30 protein | Length: 133

No structure alignment results are available for 6HCJ.f2 explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #36 | Chains g2

Description: Ribosomal protein S27a protein | Length: 156

No structure alignment results are available for 6HCJ.g2 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #37 | Chains h2

Description: RACK1 protein | Length: 317

No structure alignment results are available for 6HCJ.h2 explicitly.

It is represented by chain 3FRX.A which has more than 50% sequence identity.

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Entity #38 | Chains A3

Description: Ribosomal protein L8 protein | Length: 257

No structure alignment results are available for 6HCJ.A3 explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #39 | Chains B3

Description: uL3 protein | Length: 403

No structure alignment results are available for 6HCJ.B3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #4 | Chains A2

Description: 18S ribosomal RNA rna | Length: 1869

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #40 | Chains C3

Description: uL4 protein | Length: 425

No structure alignment results are available for 6HCJ.C3 explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #41 | Chains D3

Description: 60S ribosomal protein L5 protein | Length: 297

No structure alignment results are available for 6HCJ.D3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #42 | Chains E3

Description: 60S ribosomal protein L6 protein | Length: 291

No structure alignment results are available for 6HCJ.E3 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #43 | Chains F3

Description: uL30 protein | Length: 247

No structure alignment results are available for 6HCJ.F3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #44 | Chains G3

Description: eL8 protein | Length: 319

No structure alignment results are available for 6HCJ.G3 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #45 | Chains H3

Description: uL6 protein | Length: 192

No structure alignment results are available for 6HCJ.H3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #46 | Chains I3

Description: 60S ribosomal protein L10 protein | Length: 214

No structure alignment results are available for 6HCJ.I3 explicitly.

It is represented by chain XXXX.null which has more than 30% sequence identity.

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Entity #47 | Chains J3

Description: Ribosomal protein L11 protein | Length: 178

No structure alignment results are available for 6HCJ.J3 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #48 | Chains L3

Description: eL13 protein | Length: 211

No structure alignment results are available for 6HCJ.L3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #49 | Chains M3

Description: Ribosomal protein L14 protein | Length: 218

No structure alignment results are available for 6HCJ.M3 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #5 | Chains B2

Description: uS2 protein | Length: 295

No structure alignment results are available for 6HCJ.B2 explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #50 | Chains N3

Description: Ribosomal protein L15 protein | Length: 204

No structure alignment results are available for 6HCJ.N3 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #51 | Chains O3

Description: uL13 protein | Length: 203

No structure alignment results are available for 6HCJ.O3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #52 | Chains P3

Description: uL22 protein | Length: 184

No structure alignment results are available for 6HCJ.P3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #53 | Chains Q3

Description: eL18 protein | Length: 188

No structure alignment results are available for 6HCJ.Q3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #54 | Chains R3

Description: eL19 protein | Length: 196

No structure alignment results are available for 6HCJ.R3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #55 | Chains S3

Description: eL20 protein | Length: 176

No structure alignment results are available for 6HCJ.S3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #56 | Chains T3

Description: eL21 protein | Length: 160

No structure alignment results are available for 6HCJ.T3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #57 | Chains U3

Description: eL22 protein | Length: 128

No structure alignment results are available for 6HCJ.U3 explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #58 | Chains V3

Description: Ribosomal protein L23 protein | Length: 140

No structure alignment results are available for 6HCJ.V3 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #59 | Chains X3

Description: uL23 protein | Length: 156

No structure alignment results are available for 6HCJ.X3 explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #6 | Chains C2

Description: 40S ribosomal protein S3a protein | Length: 264

No structure alignment results are available for 6HCJ.C2 explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #60 | Chains Y3

Description: Ribosomal protein L26 protein | Length: 145

No structure alignment results are available for 6HCJ.Y3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #61 | Chains Z3

Description: 60S ribosomal protein L27 protein | Length: 136

No structure alignment results are available for 6HCJ.Z3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #62 | Chains a3

Description: uL15 protein | Length: 148

No structure alignment results are available for 6HCJ.a3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #63 | Chains b3

Description: eL29 protein | Length: 245

No structure alignment results are available for 6HCJ.b3 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #64 | Chains c3

Description: eL30 protein | Length: 115

No structure alignment results are available for 6HCJ.c3 explicitly.

It is represented by chain 3VI6.A which has more than 95% sequence identity.

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Entity #65 | Chains d3

Description: eL31 protein | Length: 125

No structure alignment results are available for 6HCJ.d3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #66 | Chains e3

Description: eL32 protein | Length: 135

No structure alignment results are available for 6HCJ.e3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #67 | Chains f3

Description: eL33 protein | Length: 110

No structure alignment results are available for 6HCJ.f3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #68 | Chains g3

Description: eL34 protein | Length: 117

No structure alignment results are available for 6HCJ.g3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #69 | Chains h3

Description: uL29 protein | Length: 123

No structure alignment results are available for 6HCJ.h3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #7 | Chains D2

Description: uS5 protein | Length: 293

No structure alignment results are available for 6HCJ.D2 explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #70 | Chains i3

Description: 60S ribosomal protein L36 protein | Length: 105

No structure alignment results are available for 6HCJ.i3 explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #71 | Chains j3

Description: Ribosomal protein L37 protein | Length: 97

No structure alignment results are available for 6HCJ.j3 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #72 | Chains k3

Description: eL38 protein | Length: 70

No structure alignment results are available for 6HCJ.k3 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #73 | Chains l3

Description: eL39 protein | Length: 51

No structure alignment results are available for 6HCJ.l3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #74 | Chains m3

Description: eL40 protein | Length: 102

No structure alignment results are available for 6HCJ.m3 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #75 | Chains n3

Description: eL41 protein | Length: 25

No structure alignment results are available for 6HCJ.n3 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #76 | Chains o3

Description: eL42 protein | Length: 106

No structure alignment results are available for 6HCJ.o3 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #77 | Chains p3

Description: eL43 protein | Length: 92

No structure alignment results are available for 6HCJ.p3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #78 | Chains r3

Description: eL28 protein | Length: 137

No structure alignment results are available for 6HCJ.r3 explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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