6HAK

Crystal structure of HIV-1 reverse transcriptase (RT) in complex with a double stranded RNA represents the RT transcription initiation complex prior to nucleotide incorporation


Structural Similarities for the Entities in PDB 6HAK

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,C

Description: Gag-Pol polyprotein protein | Length: 556

No structure alignment results are available for 6HAK.A, 6HAK.C explicitly.

These chains are represented by chain 4G1Q.A which has more than 95% sequence identity.

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View how chain 6HAK.C compares with the representative chain PDP:4G1QAa. Select a comparison method:


Entity #2 | Chains B,D

Description: Gag-Pol polyprotein protein | Length: 444

No structure alignment results are available for 6HAK.B, 6HAK.D explicitly.

These chains are represented by chain 4G1Q.B which is 100% sequence identical.

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View how chain 6HAK.D compares with the representative chain PDP:4G1QBa. Select a comparison method:


Entity #3 | Chains E,T

Description: RNA (5'-R(P*AP*GP*UP*GP*GP*CP*GP*GP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*C)-3') rna | Length: 23

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains F,P

Description: RNA (5'-R(P*UP*CP*CP*CP*UP*GP*UP*UP*CP*GP*GP*CP*CP*GP*CP*CP*A)-3') rna | Length: 17

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References