6GQB

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)


Structural Similarities for the Entities in PDB 6GQB

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains 1

Description: Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA rna | Length: 3396

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains E

Description: 60S ribosomal protein L6-A protein | Length: 175

No structure alignment results are available for 6GQB.E explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #11 | Chains F

Description: 60S ribosomal protein L7-A protein | Length: 222

No structure alignment results are available for 6GQB.F explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #12 | Chains G

Description: 60S ribosomal protein L8-A protein | Length: 233

No structure alignment results are available for 6GQB.G explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #13 | Chains H

Description: 60S ribosomal protein L9-A protein | Length: 191

No structure alignment results are available for 6GQB.H explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #14 | Chains I

Description: 60S ribosomal protein L10 protein | Length: 220

No structure alignment results are available for 6GQB.I explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #15 | Chains J

Description: 60S ribosomal protein L11-B protein | Length: 169

No structure alignment results are available for 6GQB.J explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #16 | Chains L

Description: 60S ribosomal protein L13-A protein | Length: 193

No structure alignment results are available for 6GQB.L explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #17 | Chains M

Description: 60S ribosomal protein L14-A protein | Length: 136

No structure alignment results are available for 6GQB.M explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #18 | Chains N

Description: 60S ribosomal protein L15-A protein | Length: 203

No structure alignment results are available for 6GQB.N explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #19 | Chains O

Description: 60S ribosomal protein L16-A protein | Length: 197

No structure alignment results are available for 6GQB.O explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #2 | Chains 3

Description: 5S ribosomal RNA rna | Length: 121

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #20 | Chains P

Description: 60S ribosomal protein L17-A protein | Length: 183

No structure alignment results are available for 6GQB.P explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #21 | Chains Q

Description: 60S ribosomal protein L18-A protein | Length: 185

No structure alignment results are available for 6GQB.Q explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #22 | Chains R

Description: 60S ribosomal protein L19-A protein | Length: 188

No structure alignment results are available for 6GQB.R explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #23 | Chains S

Description: 60S ribosomal protein L20-A protein | Length: 172

No structure alignment results are available for 6GQB.S explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #24 | Chains T

Description: 60S ribosomal protein L21-A protein | Length: 159

No structure alignment results are available for 6GQB.T explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #25 | Chains U

Description: 60S ribosomal protein L22-A protein | Length: 100

No structure alignment results are available for 6GQB.U explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #26 | Chains V

Description: 60S ribosomal protein L23-A protein | Length: 136

No structure alignment results are available for 6GQB.V explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #27 | Chains W

Description: 60S ribosomal protein L24-A protein | Length: 64

No structure alignment results are available for 6GQB.W explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #28 | Chains X

Description: 60S ribosomal protein L25 protein | Length: 121

No structure alignment results are available for 6GQB.X explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #29 | Chains Y

Description: 60S ribosomal protein L26-A protein | Length: 126

No structure alignment results are available for 6GQB.Y explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #3 | Chains 4

Description: 5.8S ribosomal RNA rna | Length: 158

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #30 | Chains Z

Description: 60S ribosomal protein L27-A protein | Length: 135

No structure alignment results are available for 6GQB.Z explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #31 | Chains a

Description: 60S ribosomal protein L28 protein | Length: 148

No structure alignment results are available for 6GQB.a explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #32 | Chains b

Description: 60S ribosomal protein L29 protein | Length: 58

No structure alignment results are available for 6GQB.b explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #33 | Chains c

Description: 60S ribosomal protein L30 protein | Length: 97

No structure alignment results are available for 6GQB.c explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #34 | Chains d

Description: 60S ribosomal protein L31-A protein | Length: 109

No structure alignment results are available for 6GQB.d explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #35 | Chains e

Description: 60S ribosomal protein L32 protein | Length: 127

No structure alignment results are available for 6GQB.e explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #36 | Chains f

Description: 60S ribosomal protein L33-A protein | Length: 106

No structure alignment results are available for 6GQB.f explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #37 | Chains g

Description: 60S ribosomal protein L34-A protein | Length: 112

No structure alignment results are available for 6GQB.g explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #38 | Chains h

Description: 60S ribosomal protein L35-A protein | Length: 119

No structure alignment results are available for 6GQB.h explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #39 | Chains i

Description: 60S ribosomal protein L36-A protein | Length: 99

No structure alignment results are available for 6GQB.i explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #4 | Chains P0

Description: 60S acidic ribosomal protein P0 protein | Length: 189

No structure alignment results are available for 6GQB.P0 explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #40 | Chains j

Description: 60S ribosomal protein L37-A protein | Length: 87

No structure alignment results are available for 6GQB.j explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #41 | Chains k

Description: 60S ribosomal protein L38 protein | Length: 77

No structure alignment results are available for 6GQB.k explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #42 | Chains l

Description: 60S ribosomal protein L39 protein | Length: 50

No structure alignment results are available for 6GQB.l explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #43 | Chains m

Description: Ubiquitin-60S ribosomal protein L40 protein | Length: 52

No structure alignment results are available for 6GQB.m explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #44 | Chains n

Description: 60S ribosomal protein L41-B protein | Length: 25

No structure alignment results are available for 6GQB.n explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #45 | Chains o

Description: 60S ribosomal protein L42-A protein | Length: 105

No structure alignment results are available for 6GQB.o explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #46 | Chains p

Description: 60S ribosomal protein L43-A protein | Length: 91

No structure alignment results are available for 6GQB.p explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #47 | Chains 2

Description: 18S ribosomal RNA rna | Length: 1797

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #48 | Chains q

Description: 40S ribosomal protein S0-A protein | Length: 206

No structure alignment results are available for 6GQB.q explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #49 | Chains r

Description: 40S ribosomal protein S1-A protein | Length: 214

No structure alignment results are available for 6GQB.r explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #5 | Chains P2

Description: 60S ribosomal protein L12-A protein | Length: 94

No structure alignment results are available for 6GQB.P2 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #50 | Chains s

Description: 40S ribosomal protein S2 protein | Length: 217

No structure alignment results are available for 6GQB.s explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #51 | Chains t

Description: 40S ribosomal protein S3 protein | Length: 223

No structure alignment results are available for 6GQB.t explicitly.

It is represented by chain 4BSZ.A which is 100% sequence identical.

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Entity #52 | Chains u

Description: 40S ribosomal protein S4-A protein | Length: 260

No structure alignment results are available for 6GQB.u explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #53 | Chains v

Description: 40S ribosomal protein S5 protein | Length: 206

No structure alignment results are available for 6GQB.v explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #54 | Chains w

Description: 40S ribosomal protein S6-A protein | Length: 223

No structure alignment results are available for 6GQB.w explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #55 | Chains x

Description: 40S ribosomal protein S7-A protein | Length: 184

No structure alignment results are available for 6GQB.x explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #56 | Chains y

Description: 40S ribosomal protein S8-A protein | Length: 199

No structure alignment results are available for 6GQB.y explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #57 | Chains z

Description: 40S ribosomal protein S9-A protein | Length: 185

No structure alignment results are available for 6GQB.z explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #58 | Chains AA

Description: 40S ribosomal protein S10-A protein | Length: 105

No structure alignment results are available for 6GQB.AA explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #59 | Chains AB

Description: 40S ribosomal protein S11-A protein | Length: 153

No structure alignment results are available for 6GQB.AB explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #6 | Chains A

Description: 60S ribosomal protein L2-A protein | Length: 252

No structure alignment results are available for 6GQB.A explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #60 | Chains AC

Description: 40S ribosomal protein S12 protein | Length: 124

No structure alignment results are available for 6GQB.AC explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #61 | Chains AD

Description: 40S ribosomal protein S13 protein | Length: 150

No structure alignment results are available for 6GQB.AD explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #62 | Chains AE

Description: 40S ribosomal protein S14-B protein | Length: 127

No structure alignment results are available for 6GQB.AE explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #63 | Chains AF

Description: 40S ribosomal protein S15 protein | Length: 124

No structure alignment results are available for 6GQB.AF explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #64 | Chains AG

Description: 40S ribosomal protein S16-A protein | Length: 141

No structure alignment results are available for 6GQB.AG explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #65 | Chains AH

Description: 40S ribosomal protein S17-B protein | Length: 125

No structure alignment results are available for 6GQB.AH explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #66 | Chains AI

Description: 40S ribosomal protein S18-A protein | Length: 145

No structure alignment results are available for 6GQB.AI explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #67 | Chains AJ

Description: 40S ribosomal protein S19-A protein | Length: 143

No structure alignment results are available for 6GQB.AJ explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #68 | Chains AK

Description: 40S ribosomal protein S20 protein | Length: 107

No structure alignment results are available for 6GQB.AK explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #69 | Chains AL

Description: 40S ribosomal protein S21-A protein | Length: 87

No structure alignment results are available for 6GQB.AL explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #7 | Chains B

Description: 60S ribosomal protein L3 protein | Length: 386

No structure alignment results are available for 6GQB.B explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #70 | Chains AM

Description: 40S ribosomal protein S22-A protein | Length: 129

No structure alignment results are available for 6GQB.AM explicitly.

It is represented by chain 1I6U.a which has more than 40% sequence identity.

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Entity #71 | Chains AN

Description: 40S ribosomal protein S23-A protein | Length: 144

No structure alignment results are available for 6GQB.AN explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #72 | Chains AO

Description: 40S ribosomal protein S24-A protein | Length: 134

No structure alignment results are available for 6GQB.AO explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #73 | Chains AP

Description: 40S ribosomal protein S25-A protein | Length: 70

No structure alignment results are available for 6GQB.AP explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #74 | Chains AQ

Description: 40S ribosomal protein S26-B protein | Length: 97

No structure alignment results are available for 6GQB.AQ explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #75 | Chains AR

Description: 40S ribosomal protein S27-A protein | Length: 81

No structure alignment results are available for 6GQB.AR explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #76 | Chains AS

Description: 40S ribosomal protein S28-A protein | Length: 63

No structure alignment results are available for 6GQB.AS explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #77 | Chains AT

Description: 40S ribosomal protein S29-A protein | Length: 53

No structure alignment results are available for 6GQB.AT explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #78 | Chains AU

Description: 40S ribosomal protein S30-A protein | Length: 60

No structure alignment results are available for 6GQB.AU explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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