Structural Similarities for the Entities in PDB 6GOV

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A

Description: Transcription termination/antitermination protein NusA protein | Length: 497

No structure alignment results are available for 6GOV.A explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #10 | Chains K

Description: DNA (I) dna | Length: 65

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #11 | Chains L

Description: DNA (II) dna | Length: 65

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #12 | Chains R

Description: RNA (TRANSCRIPTION BUBBLE) rna | Length: 66

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains B

Description: Transcription antitermination protein NusB protein | Length: 141

No structure alignment results are available for 6GOV.B explicitly.

It is represented by chain 3D3B.A which has more than 95% sequence identity.

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Entity #3 | Chains E

Description: 30S ribosomal protein S10 protein | Length: 106

No structure alignment results are available for 6GOV.E explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #4 | Chains G

Description: Transcription termination/antitermination protein NusG protein | Length: 184

No structure alignment results are available for 6GOV.G explicitly.

It is represented by chain 5TBZ.J which has more than 95% sequence identity.

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Entity #5 | Chains N

Description: Antitermination protein N protein | Length: 110

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Entity #6 | Chains U,V

Description: DNA-directed RNA polymerase subunit alpha protein | Length: 329

No structure alignment results are available for 6GOV.U, 6GOV.V explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #7 | Chains W

Description: DNA-directed RNA polymerase subunit omega protein | Length: 91

No structure alignment results are available for 6GOV.W explicitly.

It is represented by chain 4YG2.E which is 100% sequence identical.

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Entity #8 | Chains X

Description: DNA-directed RNA polymerase subunit beta protein | Length: 1342

No structure alignment results are available for 6GOV.X explicitly.

It is represented by chain 4YG2.C which is 100% sequence identical.

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Entity #9 | Chains Y

Description: DNA-directed RNA polymerase subunit beta' protein | Length: 1417

No structure alignment results are available for 6GOV.Y explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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References