Structural Similarities for the Entities in PDB 6GC8

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A

Description: 23S ribosomal RNA rna | Length: 2904

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains K

Description: 50S ribosomal protein L14 protein | Length: 122

No structure alignment results are available for 6GC8.K explicitly.

It is represented by chain 1WHI.a which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 6GC8.K compares with the representative chain d1whia_. Select a comparison method:


Entity #11 | Chains L

Description: 50S ribosomal protein L15 protein | Length: 143

No structure alignment results are available for 6GC8.L explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6GC8.L compares with the representative chain xxxx. Select a comparison method:


Entity #12 | Chains M

Description: 50S ribosomal protein L16 protein | Length: 136

No structure alignment results are available for 6GC8.M explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 6GC8.M compares with the representative chain xxxx. Select a comparison method:


Entity #13 | Chains N

Description: 50S ribosomal protein L17 protein | Length: 120

No structure alignment results are available for 6GC8.N explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6GC8.N compares with the representative chain xxxx. Select a comparison method:


Entity #14 | Chains O

Description: 50S ribosomal protein L18 protein | Length: 116

No structure alignment results are available for 6GC8.O explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6GC8.O compares with the representative chain xxxx. Select a comparison method:


Entity #15 | Chains P

Description: 50S ribosomal protein L19 protein | Length: 114

No structure alignment results are available for 6GC8.P explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6GC8.P compares with the representative chain xxxx. Select a comparison method:


Entity #16 | Chains Q

Description: 50S ribosomal protein L20 protein | Length: 117

No structure alignment results are available for 6GC8.Q explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6GC8.Q compares with the representative chain xxxx. Select a comparison method:


Entity #17 | Chains R

Description: 50S ribosomal protein L21 protein | Length: 103

No structure alignment results are available for 6GC8.R explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6GC8.R compares with the representative chain xxxx. Select a comparison method:


Entity #18 | Chains S

Description: 50S ribosomal protein L22 protein | Length: 110

No structure alignment results are available for 6GC8.S explicitly.

It is represented by chain 1I4J.a which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 6GC8.S compares with the representative chain d1i4ja_. Select a comparison method:


Entity #19 | Chains T

Description: 50S ribosomal protein L23 protein | Length: 93

No structure alignment results are available for 6GC8.T explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6GC8.T compares with the representative chain xxxx. Select a comparison method:


Entity #2 | Chains B

Description: 5S ribosomal RNA rna | Length: 119

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #20 | Chains U

Description: 50S ribosomal protein L24 protein | Length: 102

No structure alignment results are available for 6GC8.U explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6GC8.U compares with the representative chain xxxx. Select a comparison method:


Entity #21 | Chains V

Description: 50S ribosomal protein L25 protein | Length: 94

No structure alignment results are available for 6GC8.V explicitly.

It is represented by chain 1DFU.p which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6GC8.V compares with the representative chain d1dfup_. Select a comparison method:


Entity #22 | Chains W

Description: 50S ribosomal protein L27 protein | Length: 76

No structure alignment results are available for 6GC8.W explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6GC8.W compares with the representative chain xxxx. Select a comparison method:


Entity #23 | Chains X

Description: 50S ribosomal protein L28 protein | Length: 77

No structure alignment results are available for 6GC8.X explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6GC8.X compares with the representative chain xxxx. Select a comparison method:


Entity #24 | Chains Y

Description: 50S ribosomal protein L29 protein | Length: 63

No structure alignment results are available for 6GC8.Y explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6GC8.Y compares with the representative chain xxxx. Select a comparison method:


Entity #25 | Chains Z

Description: 50S ribosomal protein L30 protein | Length: 58

No structure alignment results are available for 6GC8.Z explicitly.

It is represented by chain 1BXY.a which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 6GC8.Z compares with the representative chain d1bxya_. Select a comparison method:


Entity #26 | Chains 0

Description: 50S ribosomal protein L32 protein | Length: 56

No structure alignment results are available for 6GC8.0 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6GC8.0 compares with the representative chain xxxx. Select a comparison method:


Entity #27 | Chains 1

Description: 50S ribosomal protein L33 protein | Length: 50

No structure alignment results are available for 6GC8.1 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6GC8.1 compares with the representative chain xxxx. Select a comparison method:


Entity #28 | Chains 2

Description: 50S ribosomal protein L34 protein | Length: 46

No structure alignment results are available for 6GC8.2 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6GC8.2 compares with the representative chain xxxx. Select a comparison method:


Entity #29 | Chains 3

Description: 50S ribosomal protein L35 protein | Length: 64

No structure alignment results are available for 6GC8.3 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6GC8.3 compares with the representative chain xxxx. Select a comparison method:


Entity #3 | Chains C

Description: 50S ribosomal protein L2 protein | Length: 271

No structure alignment results are available for 6GC8.C explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6GC8.C compares with the representative chain xxxx. Select a comparison method:


Entity #4 | Chains D

Description: 50S ribosomal protein L3 protein | Length: 209

No structure alignment results are available for 6GC8.D explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6GC8.D compares with the representative chain xxxx. Select a comparison method:


Entity #5 | Chains E

Description: 50S ribosomal protein L4 protein | Length: 201

No structure alignment results are available for 6GC8.E explicitly.

It is represented by chain 1DMG.a which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 6GC8.E compares with the representative chain d1dmga_. Select a comparison method:


Entity #6 | Chains F

Description: 50S ribosomal protein L5 protein | Length: 177

No structure alignment results are available for 6GC8.F explicitly.

It is represented by chain 1IQ4.a which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 6GC8.F compares with the representative chain d1iq4a_. Select a comparison method:


Entity #7 | Chains G

Description: 50S ribosomal protein L6 protein | Length: 176

No structure alignment results are available for 6GC8.G explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6GC8.G compares with the representative chain xxxx. Select a comparison method:


Entity #8 | Chains H

Description: 50S ribosomal protein L9 protein | Length: 54

No structure alignment results are available for 6GC8.H explicitly.

It is represented by chain 2HBA.a which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 6GC8.H compares with the representative chain d2hbaa1. Select a comparison method:


Entity #9 | Chains J

Description: 50S ribosomal protein L13 protein | Length: 142

No structure alignment results are available for 6GC8.J explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6GC8.J compares with the representative chain xxxx. Select a comparison method:


References