Structural Similarities for the Entities in PDB 6GC6

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A

Description: 23S ribosomal RNA rna | Length: 2904

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains P

Description: 50S ribosomal protein L19 protein | Length: 114

No structure alignment results are available for 6GC6.P explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #11 | Chains Q

Description: 50S ribosomal protein L20 protein | Length: 117

No structure alignment results are available for 6GC6.Q explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #12 | Chains R

Description: 50S ribosomal protein L21 protein | Length: 103

No structure alignment results are available for 6GC6.R explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #13 | Chains S

Description: 50S ribosomal protein L22 protein | Length: 110

No structure alignment results are available for 6GC6.S explicitly.

It is represented by chain 1I4J.a which has more than 50% sequence identity.

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Entity #14 | Chains T

Description: 50S ribosomal protein L23 protein | Length: 93

No structure alignment results are available for 6GC6.T explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #15 | Chains U

Description: 50S ribosomal protein L24 protein | Length: 102

No structure alignment results are available for 6GC6.U explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #16 | Chains Y

Description: 50S ribosomal protein L29 protein | Length: 63

No structure alignment results are available for 6GC6.Y explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #17 | Chains 0

Description: 50S ribosomal protein L32 protein | Length: 56

No structure alignment results are available for 6GC6.0 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #18 | Chains 2

Description: 50S ribosomal protein L34 protein | Length: 46

No structure alignment results are available for 6GC6.2 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #19 | Chains Z

Description: 50S ribosomal protein L30 protein | Length: 58

No structure alignment results are available for 6GC6.Z explicitly.

It is represented by chain 1BXY.a which has more than 40% sequence identity.

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Entity #2 | Chains C

Description: 50S ribosomal protein L2 protein | Length: 223

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Entity #3 | Chains D

Description: 50S ribosomal protein L3 protein | Length: 209

No structure alignment results are available for 6GC6.D explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #4 | Chains E

Description: 50S ribosomal protein L4 protein | Length: 201

No structure alignment results are available for 6GC6.E explicitly.

It is represented by chain 1DMG.a which has more than 40% sequence identity.

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Entity #5 | Chains G

Description: 50S ribosomal protein L6 protein | Length: 176

No structure alignment results are available for 6GC6.G explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #6 | Chains J

Description: 50S ribosomal protein L13 protein | Length: 142

No structure alignment results are available for 6GC6.J explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #7 | Chains K

Description: 50S ribosomal protein L14 protein | Length: 122

No structure alignment results are available for 6GC6.K explicitly.

It is represented by chain 1WHI.a which has more than 50% sequence identity.

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Entity #8 | Chains L

Description: 50S ribosomal protein L15 protein | Length: 143

No structure alignment results are available for 6GC6.L explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #9 | Chains N

Description: 50S ribosomal protein L17 protein | Length: 120

No structure alignment results are available for 6GC6.N explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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References