Structural Similarities for the Entities in PDB 6G5I

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains 2

Description: 18S ribosomal RNA rna | Length: 1882

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains I

Description: 40S ribosomal protein S8 protein | Length: 208

No structure alignment results are available for 6G5I.I explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #11 | Chains J

Description: 40S ribosomal protein S9 protein | Length: 194

No structure alignment results are available for 6G5I.J explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #12 | Chains K

Description: 40S ribosomal protein S10 protein | Length: 165

No structure alignment results are available for 6G5I.K explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #13 | Chains L

Description: 40S ribosomal protein S11 protein | Length: 158

No structure alignment results are available for 6G5I.L explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #14 | Chains M

Description: 40S ribosomal protein S12 protein | Length: 132

No structure alignment results are available for 6G5I.M explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #15 | Chains N

Description: 40S ribosomal protein S13 protein | Length: 151

No structure alignment results are available for 6G5I.N explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #16 | Chains O

Description: 40S ribosomal protein S14 protein | Length: 151

No structure alignment results are available for 6G5I.O explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #17 | Chains P

Description: 40S ribosomal protein S15 protein | Length: 145

No structure alignment results are available for 6G5I.P explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #18 | Chains Q

Description: 40S ribosomal protein S16 protein | Length: 146

No structure alignment results are available for 6G5I.Q explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #19 | Chains R

Description: 40S ribosomal protein S17 protein | Length: 135

No structure alignment results are available for 6G5I.R explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #2 | Chains A

Description: 40S ribosomal protein SA protein | Length: 295

No structure alignment results are available for 6G5I.A explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #20 | Chains S

Description: 40S ribosomal protein S18 protein | Length: 152

No structure alignment results are available for 6G5I.S explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #21 | Chains T

Description: 40S ribosomal protein S19 protein | Length: 145

No structure alignment results are available for 6G5I.T explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #22 | Chains U

Description: 40S ribosomal protein S20 protein | Length: 119

No structure alignment results are available for 6G5I.U explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #23 | Chains V

Description: 40S ribosomal protein S21 protein | Length: 83

No structure alignment results are available for 6G5I.V explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #24 | Chains W

Description: 40S ribosomal protein S15a protein | Length: 130

No structure alignment results are available for 6G5I.W explicitly.

It is represented by chain 1I6U.a which has more than 40% sequence identity.

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Entity #25 | Chains X

Description: 40S ribosomal protein S23 protein | Length: 143

No structure alignment results are available for 6G5I.X explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #26 | Chains Y

Description: 40S ribosomal protein S24 protein | Length: 133

No structure alignment results are available for 6G5I.Y explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #27 | Chains Z

Description: 40S ribosomal protein S25 protein | Length: 125

No structure alignment results are available for 6G5I.Z explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #28 | Chains b

Description: 40S ribosomal protein S27 protein | Length: 84

No structure alignment results are available for 6G5I.b explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #29 | Chains c

Description: 40S ribosomal protein S28 protein | Length: 69

No structure alignment results are available for 6G5I.c explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #3 | Chains B

Description: 40S ribosomal protein S3a protein | Length: 264

No structure alignment results are available for 6G5I.B explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #30 | Chains d

Description: 40S ribosomal protein S29 protein | Length: 56

No structure alignment results are available for 6G5I.d explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #31 | Chains e

Description: 40S ribosomal protein S30 protein | Length: 59

No structure alignment results are available for 6G5I.e explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #32 | Chains f

Description: Ribosomal protein S27a protein | Length: 156

No structure alignment results are available for 6G5I.f explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #33 | Chains g

Description: Receptor of activated protein C kinase 1 protein | Length: 317

No structure alignment results are available for 6G5I.g explicitly.

It is represented by chain 3FRX.A which has more than 50% sequence identity.

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Entity #34 | Chains x

Description: RNA-binding protein PNO1 protein | Length: 252

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Entity #35 | Chains y

Description: RNA-binding protein NOB1 protein | Length: 412

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Entity #36 | Chains z

Description: Serine/threonine-protein kinase RIO1 protein | Length: 568

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Entity #4 | Chains C

Description: 40S ribosomal protein S2 protein | Length: 293

No structure alignment results are available for 6G5I.C explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #5 | Chains D

Description: 40S ribosomal protein S3 protein | Length: 243

No structure alignment results are available for 6G5I.D explicitly.

It is represented by chain 4BSZ.A which has more than 50% sequence identity.

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Entity #6 | Chains E

Description: 40S ribosomal protein S4, X isoform protein | Length: 263

No structure alignment results are available for 6G5I.E explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #7 | Chains F

Description: 40S ribosomal protein S5 protein | Length: 204

No structure alignment results are available for 6G5I.F explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #8 | Chains G

Description: 40S ribosomal protein S6 protein | Length: 249

No structure alignment results are available for 6G5I.G explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #9 | Chains H

Description: 40S ribosomal protein S7 protein | Length: 194

No structure alignment results are available for 6G5I.H explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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References