6FXC

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus


Structural Similarities for the Entities in PDB 6FXC

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains Aa,Ba

Description: 16S ribosomal RNA rna | Length: 1539

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains Aj,Bj

Description: 30S ribosomal protein S10 protein | Length: 97

No structure alignment results are available for 6FXC.Aj, 6FXC.Bj explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #11 | Chains Ak,Bk

Description: 30S ribosomal protein S11 protein | Length: 114

No structure alignment results are available for 6FXC.Ak, 6FXC.Bk explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #12 | Chains Al,Bl

Description: 30S ribosomal protein S12 protein | Length: 135

No structure alignment results are available for 6FXC.Al, 6FXC.Bl explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #13 | Chains Am,Bm

Description: 30S ribosomal protein S13 protein | Length: 121

No structure alignment results are available for 6FXC.Am, 6FXC.Bm explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #14 | Chains An,Bn

Description: 30S ribosomal protein S14 type Z protein | Length: 60

No structure alignment results are available for 6FXC.An, 6FXC.Bn explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #15 | Chains Ao,Bo

Description: 30S ribosomal protein S15 protein | Length: 88

No structure alignment results are available for 6FXC.Ao, 6FXC.Bo explicitly.

These chains are represented by chain 4A5U.B which has more than 50% sequence identity.

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Entity #16 | Chains Ap,Bp

Description: 30S ribosomal protein S16 protein | Length: 89

No structure alignment results are available for 6FXC.Ap, 6FXC.Bp explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #17 | Chains Aq,Bq

Description: 30S ribosomal protein S17 protein | Length: 80

No structure alignment results are available for 6FXC.Aq, 6FXC.Bq explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #18 | Chains Ar,Br

Description: 30S ribosomal protein S18 protein | Length: 54

No structure alignment results are available for 6FXC.Ar, 6FXC.Br explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #19 | Chains As,Bs

Description: 30S ribosomal protein S19 protein | Length: 80

No structure alignment results are available for 6FXC.As, 6FXC.Bs explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #2 | Chains Ab,Bb

Description: 30S ribosomal protein S2 protein | Length: 226

No structure alignment results are available for 6FXC.Ab, 6FXC.Bb explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #20 | Chains At,Bt

Description: 30S ribosomal protein S20 protein | Length: 81

No structure alignment results are available for 6FXC.At, 6FXC.Bt explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #21 | Chains Au,Bu

Description: 30S ribosomal protein S21 protein | Length: 52

No structure alignment results are available for 6FXC.Au, 6FXC.Bu explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #22 | Chains Av,Bv

Description: Ribosome hibernation promotion factor protein | Length: 190

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Entity #23 | Chains AA,BA

Description: 23S ribosomal RNA rna | Length: 2923

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #24 | Chains AB,BB

Description: 5S ribosomal RNA rna | Length: 115

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #25 | Chains AC,BC

Description: 50S ribosomal protein L2 protein | Length: 274

No structure alignment results are available for 6FXC.AC, 6FXC.BC explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #26 | Chains AD,BD

Description: 50S ribosomal protein L3 protein | Length: 215

No structure alignment results are available for 6FXC.AD, 6FXC.BD explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #27 | Chains AE,BE

Description: 50S ribosomal protein L4 protein | Length: 206

No structure alignment results are available for 6FXC.AE, 6FXC.BE explicitly.

These chains are represented by chain 1DMG.a which has more than 40% sequence identity.

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Entity #28 | Chains AF,BF

Description: 50S ribosomal protein L5 protein | Length: 175

No structure alignment results are available for 6FXC.AF, 6FXC.BF explicitly.

These chains are represented by chain 1IQ4.a which has more than 70% sequence identity.

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Entity #29 | Chains AG,BG

Description: 50S ribosomal protein L6 protein | Length: 175

No structure alignment results are available for 6FXC.AG, 6FXC.BG explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #3 | Chains Ac,Bc

Description: 30S ribosomal protein S3 protein | Length: 202

No structure alignment results are available for 6FXC.Ac, 6FXC.Bc explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #30 | Chains AH,BH

Description: 50S ribosomal protein L13 protein | Length: 145

No structure alignment results are available for 6FXC.AH, 6FXC.BH explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #31 | Chains AI,BI

Description: 50S ribosomal protein L14 protein | Length: 122

No structure alignment results are available for 6FXC.AI, 6FXC.BI explicitly.

These chains are represented by chain 1WHI.a which has more than 70% sequence identity.

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Entity #32 | Chains AJ,BJ

Description: 50S ribosomal protein L15 protein | Length: 146

No structure alignment results are available for 6FXC.AJ, 6FXC.BJ explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #33 | Chains AK,BK

Description: 50S ribosomal protein L16 protein | Length: 137

No structure alignment results are available for 6FXC.AK, 6FXC.BK explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #34 | Chains AL,BL

Description: 50S ribosomal protein L17 protein | Length: 120

No structure alignment results are available for 6FXC.AL, 6FXC.BL explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #35 | Chains AM,BM

Description: 50S ribosomal protein L18 protein | Length: 119

No structure alignment results are available for 6FXC.AM, 6FXC.BM explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #36 | Chains AN,BN

Description: 50S ribosomal protein L19 protein | Length: 114

No structure alignment results are available for 6FXC.AN, 6FXC.BN explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #37 | Chains AO,BO

Description: 50S ribosomal protein L20 protein | Length: 116

No structure alignment results are available for 6FXC.AO, 6FXC.BO explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #38 | Chains AP,BP

Description: 50S ribosomal protein L21 protein | Length: 102

No structure alignment results are available for 6FXC.AP, 6FXC.BP explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #39 | Chains AQ,BQ

Description: 50S ribosomal protein L22 protein | Length: 112

No structure alignment results are available for 6FXC.AQ, 6FXC.BQ explicitly.

These chains are represented by chain 1I4J.a which has more than 50% sequence identity.

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Entity #4 | Chains Ad,Bd

Description: 30S ribosomal protein S4 protein | Length: 198

No structure alignment results are available for 6FXC.Ad, 6FXC.Bd explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #40 | Chains AR,BR

Description: 50S ribosomal protein L23 protein | Length: 89

No structure alignment results are available for 6FXC.AR, 6FXC.BR explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #41 | Chains AS,BS

Description: 50S ribosomal protein L24 protein | Length: 103

No structure alignment results are available for 6FXC.AS, 6FXC.BS explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #42 | Chains AT,BT

Description: 50S ribosomal protein L25 protein | Length: 94

No structure alignment results are available for 6FXC.AT, 6FXC.BT explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #43 | Chains AU,BU

Description: 50S ribosomal protein L27 protein | Length: 82

No structure alignment results are available for 6FXC.AU, 6FXC.BU explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #44 | Chains AV,BV

Description: 50S ribosomal protein L28 protein | Length: 58

No structure alignment results are available for 6FXC.AV, 6FXC.BV explicitly.

These chains are represented by chain 5HL7.U which is 100% sequence identical.

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Entity #45 | Chains AW,BW

Description: 50S ribosomal protein L29 protein | Length: 67

No structure alignment results are available for 6FXC.AW, 6FXC.BW explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #46 | Chains AX,BX

Description: 50S ribosomal protein L30 protein | Length: 58

No structure alignment results are available for 6FXC.AX, 6FXC.BX explicitly.

These chains are represented by chain 1BXY.a which has more than 40% sequence identity.

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Entity #47 | Chains AY,BY

Description: 50S ribosomal protein L31 type B protein | Length: 59

No structure alignment results are available for 6FXC.AY, 6FXC.BY explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #48 | Chains AZ,BZ

Description: 50S ribosomal protein L32 protein | Length: 48

No structure alignment results are available for 6FXC.AZ, 6FXC.BZ explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #49 | Chains A1,B1

Description: 50S ribosomal protein L33 protein | Length: 47

No structure alignment results are available for 6FXC.A1, 6FXC.B1 explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #5 | Chains Ae,Be

Description: 30S ribosomal protein S5 protein | Length: 156

No structure alignment results are available for 6FXC.Ae, 6FXC.Be explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #50 | Chains A2,B2

Description: 50S ribosomal protein L34 protein | Length: 43

No structure alignment results are available for 6FXC.A2, 6FXC.B2 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #51 | Chains A3,B3

Description: 50S ribosomal protein L35 protein | Length: 64

No structure alignment results are available for 6FXC.A3, 6FXC.B3 explicitly.

These chains are represented by chain XXXX.null which has more than 30% sequence identity.

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Entity #52 | Chains A4,B4

Description: 50S ribosomal protein L36 protein | Length: 37

No structure alignment results are available for 6FXC.A4, 6FXC.B4 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #6 | Chains Af,Bf

Description: 30S ribosomal protein S6 protein | Length: 95

No structure alignment results are available for 6FXC.Af, 6FXC.Bf explicitly.

These chains are represented by chain 3R3T.A which has more than 50% sequence identity.

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Entity #7 | Chains Ag,Bg

Description: 30S ribosomal protein S7 protein | Length: 152

No structure alignment results are available for 6FXC.Ag, 6FXC.Bg explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #8 | Chains Ah,Bh

Description: 30S ribosomal protein S8 protein | Length: 131

No structure alignment results are available for 6FXC.Ah, 6FXC.Bh explicitly.

These chains are represented by chain 1SEI.a which has more than 70% sequence identity.

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Entity #9 | Chains Ai,Bi

Description: 30S ribosomal protein S9 protein | Length: 127

No structure alignment results are available for 6FXC.Ai, 6FXC.Bi explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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References